Found 46 chains in Knotted chains table. Displaying 1 - 46. Applied filters: Probabilistic

Search results query: viral protein

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#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6kv5|A|2019-10-17|S|-3.1;
  6qd8|A|2019-10-17|S|+3.1;
  6qd7|A|2019-10-17|S|+3.1;
  6eae|F|2019-09-06|S|+3.1;
  6eal|F|2019-09-06|S|+3.1;
  6ean|F|2019-09-06|S|+3.1;
  6ead|F|2019-09-06|S|+3.1;
  6eaf|A|2019-09-06|S|+3.1;
  6eag|F|2019-09-06|S|+3.1;
  6eah|A|2019-09-06|S|+3.1;
  6eai|A|2019-09-06|S|+3.1;
  6eak|F|2019-09-06|S|+3.1;
  6eam|F|2019-09-06|S|+3.1;
  6eaj|F|2019-09-06|S|+3.1;
  6acd|A|2018-10-02|S|+3.1 +3.1;
  6g9b|A|2018-09-30|S|+3.1;
  5k6g|F|2018-09-16|S|+3.1;
  5ieq|A|2018-09-16|S|-3.1;
  5if5|A|2018-09-16|S|-3.1;
  5if7|A|2018-09-16|S|-3.1;
  6dzl|A|2018-09-15|S|+3.1;
  6dzm|A|2018-09-15|S|+3.1;
  5tdl|A|2018-09-14|S|+3.1;
  2ofz|A|2018-09-14|K|-3.1;
  5ude|F|2018-09-13|S|+3.1;
  6g9i|A|2018-09-13|S|+3.1 +3.1;
  5tdg|A|2018-09-13|S|+3.1;
  5ejb|A|2018-09-12|S|+3.1;
  5ea8|F|2018-09-12|S|+3.1;
  5c6b|F|2018-09-12|S|+3.1;
  5c69|A|2018-09-12|S|+3.1;
  5evm|A|2018-09-06|S|+3.1;
  6f6s|A|2018-01-03|S|+3.1;
  6f6n|A|2018-01-03|S|+3.1;
  6f5u|A|2018-01-03|S|+3.1;
  5gs6|A|2017-01-05|S|+3.1 +3.1;
  5k6c|F|2016-10-15|S|+3.1;
  5k6b|F|2016-09-02|S|+3.1;
  4wsg|A|2015-02-12|S|+3.1;
  2b9b|A|2014-08-31|S|+3.1;
  4o6d|B|2014-07-31|K|+3.1;
  4o6d|A|2014-07-31|K|+3.1;
  4o6b|A|2014-07-31|S|+3.1;
  2j85|A|2014-07-31|S|+3.1;
  2j6c|A|2014-07-31|S|+3.1;
  2j6b|A|2014-07-31|S|+3.1;
Knot types Knot loop types pdb Title
S -31
1
6kv5A Structure of influenza d virus apo polymerase
S +31 6qd8A Em structure of a ebov-gp bound to 4m0368 neutralizing antibody
S +31 6qd7A Em structure of a ebov-gp bound to 3t0331 neutralizing antibody
S +31
1
6eaeF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant l141w stabilized in the prefusion state
S +31
1
6ealF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant d486n stabilized in the prefusion state
S +31
1
6eanF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant f488i stabilized in the prefusion state
S +31
1
6eadF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant f140i stabilized in the prefusion state
S +31
1
6eafA Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant g143s stabilized in the prefusion state
S +31
1
6eagF Crystal structure of fusion inhibitor jnj-2408068 in complex with human respiratory syncytial virus fusion glycoprotein escape variant g143s stabilized in the prefusion state
S +31
1
6eahA Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant k394r-s398l stabilized in the prefusion state
S +31
1
6eaiA Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant s398l stabilized in the prefusion state
S +31
1
6eakF Crystal structure of fusion inhibitor jnj-2408068 in complex with human respiratory syncytial virus fusion glycoprotein escape variant t400a stabilized in the prefusion state
S +31
1
6eamF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant e487d stabilized in the prefusion state
S +31
1
6eajF Crystal structure of human respiratory syncytial virus fusion glycoprotein inhibitor escape variant t400a stabilized in the prefusion state
S +31 +31
1
6acdA Trypsin-cleaved and low ph-treated sars-cov spike glycoprotein and ace2 complex, ace2-free conformation with one rbd in up conformation
S +31 6g9bA Crystal structure of ebolavirus glycoprotein in complex with imipramine
S +31 5k6gF Crystal structure of prefusion-stabilized rsv f single-chain 9-24 ds-cav1 variant.
S -31
1
5ieqA Crystal structure of polymerase acid protein (pa) from influenza a virus, wilson-smith/1933 (h1n1) bound to fragment hit ebsi-747 1-(4-chlorophenyl)-1h-imidazole
S -31
1
5if5A Crystal structure of polymerase acid protein (pa) from influenza a virus, wilson-smith/1933 (h1n1) bound to ebsi-39 (2,3-dichlorophenyl)methanol
S -31
1
5if7A Crystal structure of polymerase acid protein (pa) from influenza a virus, wilson-smith/1933 (h1n1) bound to fragment hit ebsi-279 n-[(4-chlorophenyl)methyl]-1-methyl-1h-pyrazolo[3,4-d]pyrimidin-4-amine
S +31 6dzlA Ebola virus makona variant gp (mucin-deleted) in complex with pan-ebolavirus human antibody adi-15878 fab
S +31 6dzmA Bundibugyo virus gp (mucin-deleted) in complex with pan-ebolavirus human antibody adi-15878 fab
S +31 5tdlA Crystal structure of prefusion-stabilized bovine rsv fusion glycoprotein (single-chain ds2-v1 variant: strain 391-2 sc9 ds-cav1 q98c q361c)
K -31 2ofzA Ultrahigh resolution crystal structure of rna binding domain of sars nucleopcapsid (n protein) at 1.1 angstrom resolution in monoclinic form.
S +31
1
5udeF Crystal structure of rsv f b9320 ds-cav1
S +31 +31 6g9iA Crystal structure of ebolavirus glycoprotein in complex with clomipramine
S +31
1
5tdgA Crystal structure of prefusion-stabilized bovine rsv f (ds-cav1 variant: strain atue51908)
S +31
1
5ejbA Crystal structure of prefusion hendra virus f protein
S +31
1
5ea8F Crystal structure of prefusion rsv f glycoprotein fusion inhibitor resistance mutant d489y
S +31
1
5c6bF Crystal structure of prefusion-stabilized rsv f variant sc-tm
S +31
1
5c69A Crystal structure of prefusion-stabilized rsv f variant pr-dm
S +31 5evmA Crystal structure of nipah virus fusion glycoprotein in the prefusion state
S +31 6f6sA Crystal structure of ebolavirus glycoprotein in complex with benztropine
S +31 6f6nA Crystal structure of ebolavirus glycoprotein in complex with sertraline
S +31 6f5uA Crystal structure of ebolavirus glycoprotein in complex with bepridil
S +31 +31 5gs6A Full-length ns1 structure of zika virus from 2015 brazil strain
S +31 5k6cF Crystal structure of prefusion-stabilized rsv f single-chain 9-10 ds-cav1 variant.
S +31 5k6bF Crystal structure of prefusion-stabilized rsv f single-chain 9 ds-cav1 variant.
S +31 4wsgA Crystal structure of soluble wr piv5 f-gcnt
S +31 2b9bA Structure of the parainfluenza virus 5 f protein in its metastable, pre-fusion conformation
K +31
1
4o6dB West nile virus non-structural protein 1 (ns1) form 1 crystal
K +31
1
4o6dA West nile virus non-structural protein 1 (ns1) form 1 crystal
S +31
1
4o6bA Dengue type2 virus non-structural protein 1 (ns1) form 1 crystal
S +31 2j85A B116 of sulfolobus turreted icosahedral virus (stiv)
S +31 2j6cA Crystal structure of afv3-109, a highly conserved protein from crenarchaeal viruses
S +31 2j6bA Crystal structure of afv3-109, a highly conserved protein from crenarchaeal viruses
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling