| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 172-237 | 66 | 1-171, 238-324 | 171 | 87 | knot |
Chain Sequence |
MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLPHHHHHH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 172-237 | 66 | 1-171, 238-324 | 171 | 87 | knot | ||||
| view details |
 |
2.1 | 169-234 | 66 | 1-123, 238-324 | 124-168, 235-237 | 123 | 87 | slipknot |
| publication title |
Crystal structure of a transcarbamylase-like protein from the anaerobic bacterium Bacteroides fragilis at 2.0 A resolution.
pubmed doi rcsb |
| structure length |
324
|
| molecule tags |
Transferase
|
| source organism |
Bacteroides fragilis
|
| sequence length |
324
|
| molecule keywords |
Transcarbamylase
|
| ec nomenclature |
ec
2.1.3.9: N-acetylornithine carbamoyltransferase. |
| pdb deposition date | 2001-08-15 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| X | PF00185 | OTCace | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |
#chains in the KnotProt database with same CATH superfamily 3L02 A; 3M4N A; 2FG7 X; 2FG7 C; 3L04 A; 3KZC A; 3L06 A; 3M5C A; 3KZO A; 2FG6 C; 3KZK A; 3M5D A; 1YH1 A; 3KZN A; 3L05 A; 1JS1 X; 2G7M C; 3M4J A; 3KZM A; #chains in the KnotProt database with same CATH topology 3RDP A; 3M4N A; 3FSG A; 3L04 A; 1E2N A; 1KI6 A; 4IVP A; 3KZK A; 1QMG A; 3KZC A; 1DBI A; 1R4M B; 3L02 A; 2FG7 C; 1VTK A; 1GKU B; 4JBX A; 3FR8 A; 2FG6 C; 2G7M C; 1KI6 B; 3F0T A; 1LNS A; 1E2H A; 1KI4 A; 1JS1 X; 3KZM A; 3M5D A; 3FR7 A; 1QHI A; 1YRL A; 1OF1 A; 3M5C A; 3L05 A; 4IVR A; 1E2I A; 1KI3 A; 1P75 A; 2VTK A; 1YH1 A; 1F48 A; 1YVE I; 1E2L A; 1KI8 A; 3M4J A; 2XTJ A; 1E2P A; 4JBY A; 2FG7 X; 1E2J A; 1KI2 A; 1P72 A; 1E2K A; 3KZO A; 1P7C A; 2KI5 A; 3L06 A; 1E2M A; 1KI7 A; 4IVQ A; 1R4N B; 1KIM A; 1P6X A; 3VTK A; 1OSN A; 1P73 A; 3KZN A; #chains in the KnotProt database with same CATH homology 3M4N A; 3FSG A; 3KZK A; 1DBI A; 3L02 A; 2FG7 C; 1GKU B; 2FG6 C; 1LNS A; 3M5C A; 1JS1 X; 3KZM A; 3M5D A; 3KZC A; 3L05 A; 3L04 A; 2XTJ A; 1YH1 A; 3KZN A; 3M4J A; 2FG7 X; 2G7M C; 3KZO A; 3L06 A;
#similar chains in the KnotProt database (40% sequence similarity)
1JS1 X; 2FG6 C; 2FG7 C; 2FG7 X; 2G7M C;
#similar chains in the pdb database (40% sequence similarity)
1JS1 Y; 1JS1 Z; 2FG6 D; 2FG6 E; 2FG6 X; 2FG6 Y; 2FG6 Z; 2FG7 D; 2FG7 E; 2FG7 Y; 2FG7 Z; 2G7M D; 2G7M E; 2G7M X; 2G7M Y; 2G7M Z;