1JS1 | KnotProt

Knot K +3₁

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	172-237	66	1-171, 238-324			171	87	knot

Chain Sequence

MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLPHHHHHH

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				3.1	172-237	66	1-171, 238-324			171	87	knot
view details				2.1	169-234	66		1-123, 238-324	124-168, 235-237	123	87	slipknot

publication title	Crystal structure of a transcarbamylase-like protein from the anaerobic bacterium Bacteroides fragilis at 2.0 A resolution. pubmed doi rcsb
structure length	324
molecule tags	Transferase
source organism	Bacteroides fragilis
sequence length	324
molecule keywords	Transcarbamylase
ec nomenclature	ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date	2001-08-15
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00185	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Rossmann fold	1js1X02
3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Rossmann fold	1js1X01

3L02A 3M4NA 2FG7X 2FG7C 3L04A 3KZCA 3L06A 3M5CA 3KZOA 2FG6C 3KZKA 3M5DA 1YH1A 3KZNA 3L05A 1JS1X 2G7MC 3M4JA 3KZMA
chains in the KnotProt database with same CATH superfamily

3RDPA 3M4NA 3FSGA 3L04A 1E2NA 1KI6A 4IVPA 3KZKA 1QMGA 3KZCA 1DBIA 1R4MB 3L02A 2FG7C 1VTKA 1GKUB 4JBXA 3FR8A 1II9A 2FG6C 2G7MC 1KI6B 3F0TA 1LNSA 1E2HA 1KI4A 1JS1X 3KZMA 3M5DA 3FR7A 1QHIA 1YRLA 1OF1A 3M5CA 3L05A 4IVRA 1E2IA 1KI3A 1P75A 2VTKA 1YH1A 1F48A 1YVEI 1E2LA 1KI8A 3M4JA 2XTJA 1E2PA 4JBYA 2FG7X 1E2JA 1KI2A 1P72A 1E2KA 3KZOA 1P7CA 2KI5A 3L06A 1E2MA 1KI7A 4IVQA 1R4NB 1KIMA 1P6XA 3VTKA 1OSNA 1P73A 3KZNA
chains in the KnotProt database with same CATH topology

3M4NA 3FSGA 3KZKA 1DBIA 3L02A 2FG7C 1GKUB 2FG6C 1LNSA 3M5CA 1JS1X 3KZMA 3M5DA 3KZCA 3L05A 3L04A 2XTJA 1YH1A 3KZNA 3M4JA 2FG7X 2G7MC 3KZOA 3L06A
chains in the KnotProt database with same CATH homology

#chains in the KnotProt database with same CATH superfamily
 3L02 A;  3M4N A;  2FG7 X;  2FG7 C;  3L04 A;  3KZC A;  3L06 A;  3M5C A;  3KZO A;  2FG6 C;  3KZK A;  3M5D A;  1YH1 A;  3KZN A;  3L05 A;  1JS1 X;  2G7M C;  3M4J A;  3KZM A; 
#chains in the KnotProt database with same CATH topology
 3RDP A;  3M4N A;  3FSG A;  3L04 A;  1E2N A;  1KI6 A;  4IVP A;  3KZK A;  1QMG A;  3KZC A;  1DBI A;  1R4M B;  3L02 A;  2FG7 C;  1VTK A;  1GKU B;  4JBX A;  3FR8 A;  1II9 A;  2FG6 C;  2G7M C;  1KI6 B;  3F0T A;  1LNS A;  1E2H A;  1KI4 A;  1JS1 X;  3KZM A;  3M5D A;  3FR7 A;  1QHI A;  1YRL A;  1OF1 A;  3M5C A;  3L05 A;  4IVR A;  1E2I A;  1KI3 A;  1P75 A;  2VTK A;  1YH1 A;  1F48 A;  1YVE I;  1E2L A;  1KI8 A;  3M4J A;  2XTJ A;  1E2P A;  4JBY A;  2FG7 X;  1E2J A;  1KI2 A;  1P72 A;  1E2K A;  3KZO A;  1P7C A;  2KI5 A;  3L06 A;  1E2M A;  1KI7 A;  4IVQ A;  1R4N B;  1KIM A;  1P6X A;  3VTK A;  1OSN A;  1P73 A;  3KZN A; 
#chains in the KnotProt database with same CATH homology
 3M4N A;  3FSG A;  3KZK A;  1DBI A;  3L02 A;  2FG7 C;  1GKU B;  2FG6 C;  1LNS A;  3M5C A;  1JS1 X;  3KZM A;  3M5D A;  3KZC A;  3L05 A;  3L04 A;  2XTJ A;  1YH1 A;  3KZN A;  3M4J A;  2FG7 X;  2G7M C;  3KZO A;  3L06 A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1JS1X

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁