| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 54-310 | 257 | 1-53 | 369-405 | 311-368 | 53 | 37 | slipknot |
Chain Sequence |
VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 36-297 | 262 | 1-35 | 319-405 | 298-318 | 35 | 87 | slipknot | ||
| view details |
|
2.1 | 40-333 | 294 | 1-39 | 345-405 | 334-344 | 39 | 61 | slipknot | ||
| view details |
|
2.1 | 11-356 | 346 | 1-10 | 369-405 | 357-368 | 10 | 37 | slipknot | ||
| view details |
|
2.1 | 40-350 | 311 | 1-5, 370-405 | 6-39, 351-369 | 5 | 36 | slipknot | |||
| view details |
 |
3.1 | 40-369 | 330 | 1-5, 371-405 | 6-39, 370-370 | 5 | 35 | slipknot | |||
| view details |
|
2.1 | 40-370 | 331 | 1-5, 373-405 | 6-39, 371-372 | 5 | 33 | slipknot | |||
| view details |
|
2.1 | 39-372 | 334 | 1-5, 375-405 | 6-38, 373-374 | 5 | 31 | slipknot | |||
| view details |
|
2.1 | 40-374 | 335 | 1-5, 376-405 | 6-39, 375-375 | 5 | 30 | slipknot | |||
| view details |
|
3.1 | 40-317 | 278 | 1-11, 332-405 | 12-39, 318-331 | 11 | 74 | slipknot | |||
| view details |
 |
1.1 | 57-314 | 258 | 1-42, 329-405 | 43-56, 315-328 | 42 | 77 | slipknot | |||
| view details |
|
2.1 | 57-328 | 272 | 1-42, 331-405 | 43-56, 329-330 | 42 | 75 | slipknot |
| sequence length |
405
|
| structure length |
405
|
| publication title |
Structure of a glutamate transporter homologue from Pyrococcus horikoshii
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
proton glutamate symport protein
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 140
|
| ec nomenclature | |
| pdb deposition date | 2004-09-14 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Proton glutamate symport protein |
#chains in the KnotProt database with same CATH superfamily 3KBC A; 2NWL A; 3V8F A; 1XFH A; 2NWW A; 2NWX A; #chains in the KnotProt database with same CATH topology 3KBC A; 2NWL A; 3V8F A; 1XFH A; 2NWW A; 2NWX A; #chains in the KnotProt database with same CATH homology 3KBC A; 2NWL A; 3V8F A; 1XFH A; 2NWW A; 2NWX A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
