1XFHA

Structure of glutamate transporter homolog from pyrococcus horikoshii
Slipknot S +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 54-310 257 1-53 369-405 311-368 53 37 slipknot
Chain Sequence
VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 36-297 262 1-35 319-405 298-318 35 87 slipknot
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2.1 40-333 294 1-39 345-405 334-344 39 61 slipknot
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2.1 11-356 346 1-10 369-405 357-368 10 37 slipknot
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2.1 40-350 311 1-5, 370-405 6-39, 351-369 5 36 slipknot
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3.1 40-369 330 1-5, 371-405 6-39, 370-370 5 35 slipknot
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2.1 40-370 331 1-5, 373-405 6-39, 371-372 5 33 slipknot
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2.1 39-372 334 1-5, 375-405 6-38, 373-374 5 31 slipknot
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2.1 40-374 335 1-5, 376-405 6-39, 375-375 5 30 slipknot
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3.1 40-317 278 1-11, 332-405 12-39, 318-331 11 74 slipknot
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1.1 57-314 258 1-42, 329-405 43-56, 315-328 42 77 slipknot
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2.1 57-328 272 1-42, 331-405 43-56, 329-330 42 75 slipknot
publication title Structure of a glutamate transporter homologue from Pyrococcus horikoshii
pubmed doi rcsb
structure length 405
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 405
molecule keywords proton glutamate symport protein
ec nomenclature
pdb deposition date 2004-09-14
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Proton glutamate symport protein 1xfhA00
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH superfamily
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH topology
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
#chains in the KnotProt database with same CATH topology
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
#chains in the KnotProt database with same CATH homology
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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