2G7MC

Crystal structure of b. fragilis n-succinylornithine transcarbamylase p90e mutant complexed with carbamoyl phosphate and n-acetylnorvaline
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 174-239 66 1-173, 240-320 173 81 knot
Chain Sequence
SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 173-283 111 1-172, 284-320 172 37 knot
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3.1 173-239 67 1-172 284-320 240-283 172 37 slipknot
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2.1 171-236 66 1-24, 240-320 25-170, 237-239 24 81 slipknot
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2.1 175-287 113 1-172, 300-320 173-174, 288-299 172 21 slipknot
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3.1 175-306 132 1-172, 314-320 173-174, 307-313 172 7 slipknot
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3.1 175-314 140 1-172, 320-320 173-174, 315-319 172 1 slipknot
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3.1 175-319 145 320-320 1-172 173-174 172 0 slipknot
sequence length 320
structure length 320
publication title A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords putative ornithine carbamoyltransferase
source organism Bacteroides fragilis
total genus Genus: 114
ec nomenclature ec 2.1.3.-:
pdb deposition date 2006-02-28
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 2g7mC02
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 2g7mC01
3L02A 2G7MC 3L05A 3KZKA 1JS1X 1YH1A 3L06A 3M5CA 3M4NA 3KZMA 3KZNA 3KZCA 3KZOA 3L04A 3M4JA 3M5DA 2FG6C
chains in the KnotProt database with same CATH superfamily
3VTKA 4IVPA 3FR8A 1JS1X 1DBIA 1YH1A 2XTJA 3L06A 3M4NA 1GKUB 4IVRA 1KI8A 3KZCA 1QMGA 3M5DA 1E2IA 3L02A 1E2JA 2G7MC 1KI7A 4JBYA 3RDPA 1P72A 1LNSA 3KZNA 3KZMA 3L04A 1F48A 1P75A 1QHIA 1E2NA 1KI2A 2KI5A 3FSGA 1KIMA 1KI6B 1YRLA 1P6XA 1P73A 3KZKA 3L05A 1YVEI 1P7CA 1VTKA 3M4JA 1E2KA 4IVQA 2FG6C 1E2HA 3F0TA 1KI4A 1E2PA 1R4MB 1KI6A 3M5CA 1OF1A 1II9A 3KZOA 1R4NB 1E2LA 1KI3A 1OSNA 2VTKA 3FR7A 4JBXA 1E2MA
chains in the KnotProt database with same CATH topology
1JS1X 1YH1A 2XTJA 3L06A 3M4NA 1GKUB 3KZCA 3M5DA 3L02A 2G7MC 3KZMA 1LNSA 3KZNA 3L04A 3FSGA 3L05A 3KZKA 3M4JA 2FG6C 3M5CA 3KZOA 1DBIA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3L02 A;  2G7M C;  3L05 A;  3KZK A;  1JS1 X;  1YH1 A;  3L06 A;  3M5C A;  3M4N A;  3KZM A;  3KZN A;  3KZC A;  3KZO A;  3L04 A;  3M4J A;  3M5D A;  2FG6 C; 
#chains in the KnotProt database with same CATH topology
 3VTK A;  4IVP A;  3FR8 A;  1JS1 X;  1DBI A;  1YH1 A;  2XTJ A;  3L06 A;  3M4N A;  1GKU B;  4IVR A;  1KI8 A;  3KZC A;  1QMG A;  3M5D A;  1E2I A;  3L02 A;  1E2J A;  2G7M C;  1KI7 A;  4JBY A;  3RDP A;  1P72 A;  1LNS A;  3KZN A;  3KZM A;  3L04 A;  1F48 A;  1P75 A;  1QHI A;  1E2N A;  1KI2 A;  2KI5 A;  3FSG A;  1KIM A;  1KI6 B;  1YRL A;  1P6X A;  1P73 A;  3KZK A;  3L05 A;  1YVE I;  1P7C A;  1VTK A;  3M4J A;  1E2K A;  4IVQ A;  2FG6 C;  1E2H A;  3F0T A;  1KI4 A;  1E2P A;  1R4M B;  1KI6 A;  3M5C A;  1OF1 A;  1II9 A;  3KZO A;  1R4N B;  1E2L A;  1KI3 A;  1OSN A;  2VTK A;  3FR7 A;  4JBX A;  1E2M A; 
#chains in the KnotProt database with same CATH homology
 1JS1 X;  1YH1 A;  2XTJ A;  3L06 A;  3M4N A;  1GKU B;  3KZC A;  3M5D A;  3L02 A;  2G7M C;  3KZM A;  1LNS A;  3KZN A;  3L04 A;  3FSG A;  3L05 A;  3KZK A;  3M4J A;  2FG6 C;  3M5C A;  3KZO A;  1DBI A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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