3J7Ys

Structure of the large ribosomal subunit from human mitochondria
Knot K -31 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 192-255 64 1-191, 256-390 191 135 knot
Chain Sequence
VARYPPIVASMTADSKAARLRRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLP--------------------AALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 52-358 307 1-51, 359-370 51 12 knot
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3.1m 170-238 69 1-151, 259-370 152-169, 239-258 151 112 slipknot
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3.1m 171-240 70 1-151, 265-370 152-170, 241-264 151 106 slipknot
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2.1m 170-264 95 1-151, 278-370 152-169, 265-277 151 93 slipknot
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2.1m 162-277 116 1-156, 279-370 157-161, 278-278 156 92 slipknot
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3.1m 171-333 163 334-370 1-151 152-170 151 36 slipknot
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2.1m 171-264 94 1-169, 275-370 170-170, 265-274 169 96 slipknot
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3.1m 170-299 130 1-156, 312-370 157-169, 300-311 156 59 slipknot
sequence length 390
structure length 370
publication title Structure of the large ribosomal subunit from human mitochondria.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
missing residues 80-99
total genus Genus: 26
ec nomenclature
pdb deposition date 2014-08-26
KnotProt deposition date 2014-10-15
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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