3LRCA

Structure of e. coli adic (p1)
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-205 170 206-430 1-19 20-35 19 224 slipknot
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41 14-242 229 1-13 284-430 243-283 13 147 slipknot
Chain Sequence
DAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--------------------TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-241 224 1-17 260-410 242-259 17 151 slipknot
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1.1 24-221 198 1-12, 241-410 13-23, 222-240 12 170 slipknot
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2.1 39-275 237 1-13, 333-410 14-38, 276-332 13 78 slipknot
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2.1 32-198 167 1-15, 215-410 16-31, 199-214 15 196 slipknot
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2.1 32-214 183 1-15, 224-410 16-31, 215-223 15 187 slipknot
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2.1 40-341 302 342-410 1-15 16-39 15 68 slipknot
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2.1 35-203 169 1-31, 224-410 32-34, 204-223 31 187 slipknot
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2.1 27-223 197 1-23, 227-410 24-26, 224-226 23 184 slipknot
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2.1 34-223 190 1-26, 227-410 27-33, 224-226 26 184 slipknot
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2.1 32-234 203 1-23, 242-410 24-31, 235-241 23 169 slipknot
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2.1 32-226 195 1-24, 234-410 25-31, 227-233 24 177 slipknot
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2.1 34-196 163 1-25, 204-410 26-33, 197-203 25 207 slipknot
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2.1 39-225 187 1-29, 243-410 30-38, 226-242 29 168 slipknot
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1.1 39-221 183 1-33, 226-410 34-38, 222-225 33 185 slipknot
sequence length 430
structure length 410
publication title Structure and mechanism of an amino acid antiporter
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Arginine/agmatine antiporter
source organism Escherichia coli
missing residues 248-267
total genus Genus: 110
ec nomenclature
pdb deposition date 2010-02-11
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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