| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+61 | 76-291 | 216 | 1-75, 292-311 | 75 | 20 | knot | ||||
| view details |
 |
+31 | 141-248 | 108 | 1-42, 295-311 | 43-140, 249-294 | 42 | 17 | slipknot | |||
| view details |
 |
41 | 125-289 | 165 | 1-4, 304-311 | 5-124, 290-303 | 4 | 8 | slipknot |
Chain Sequence |
HHHHHSSGLVPRGSHMTNPAYFPQLSQLDVSGEMESTYEDIRLTLRVPWVAFGCRVLATFPGYLPLAWRRSAEALITRYAEQAADELRERSLLNIGPLPNLKERLYAAGFDDGEIEKVRRVLYAFNYGNPKYLLLITALSESMQMRPVGGAEVSSELRASIPKGHPKGMDPLLPLVDATKASTEVQGLLKRVADLHYHHGPASDFQALANWPKVLQIVTDEVLAPVARTEQYDAKSRELVTRARELVRGLPGSAGVQRSELMSMLTPNELAGLTGVLFMYQRFIADITISIIHITECLDGAEAASKSPFPI
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 89-255 | 167 | 1-73, 284-311 | 74-88, 256-283 | 73 | 28 | slipknot | |||
| view details |
 |
3.1 | 121-254 | 134 | 1-88, 283-311 | 89-120, 255-282 | 88 | 29 | slipknot | |||
| view details |
|
3.1 | 121-282 | 162 | 1-88, 284-311 | 89-120, 283-283 | 88 | 28 | slipknot | |||
| view details |
|
2.1 | 122-279 | 158 | 1-91, 292-311 | 92-121, 280-291 | 91 | 20 | slipknot | |||
| view details |
|
2.1 | 122-291 | 170 | 1-92, 293-311 | 93-121, 292-292 | 92 | 19 | slipknot | |||
| view details |
 |
2.3 | 134-280 | 147 | 1-119, 295-311 | 120-133, 281-294 | 119 | 17 | slipknot | |||
| view details |
|
2.3 | 134-294 | 161 | 1-122, 296-311 | 123-133, 295-295 | 122 | 16 | slipknot | |||
| view details |
|
2.3 | 130-295 | 166 | 1-123, 297-311 | 124-129, 296-296 | 123 | 15 | slipknot | |||
| view details |
|
2.1 | 136-254 | 119 | 1-120, 281-311 | 121-135, 255-280 | 120 | 31 | slipknot | |||
| view details |
|
2.1 | 136-280 | 145 | 1-133, 282-311 | 134-135, 281-281 | 133 | 30 | slipknot | |||
| view details |
|
2.1 | 136-281 | 146 | 1-133, 284-311 | 134-135, 282-283 | 133 | 28 | slipknot | |||
| view details |
|
2.3 | 135-283 | 149 | 1-133, 294-311 | 134-134, 284-293 | 133 | 18 | slipknot | |||
| view details |
|
2.3 | 136-283 | 148 | 1-134, 294-311 | 135-135, 284-293 | 134 | 18 | slipknot |
| sequence length |
311
|
| structure length |
311
|
| publication title |
The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Halocarboxylic acid dehalogenase DehI
|
| source organism |
Pseudomonas putida
|
| total genus |
 Genus: 109
|
| ec nomenclature |
ec
3.8.1.2: (S)-2-haloacid dehalogenase. |
| pdb deposition date | 2007-12-05 |
| KnotProt deposition date | 2018-09-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10778 | DehI | Halocarboxylic acid dehydrogenase DehI |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
