| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 19-257 | 239 | 1-18, 258-490 | 18 | 233 | knot |
Chain Sequence |
TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 18-297 | 280 | 1-17, 298-478 | 17 | 181 | knot | ||||
| view details |
 |
3.2m | 17-253 | 237 | 1-16 | 261-478 | 254-260 | 16 | 218 | slipknot | ||
| view details |
|
3.2m | 11-260 | 250 | 1-10 | 267-478 | 261-266 | 10 | 212 | slipknot | ||
| view details |
|
3.2m | 17-264 | 248 | 1-16 | 275-478 | 265-274 | 16 | 204 | slipknot | ||
| view details |
|
3.2m | 18-275 | 258 | 1-17 | 293-478 | 276-292 | 17 | 186 | slipknot | ||
| view details |
|
3.2m | 9-293 | 285 | 1-8 | 299-478 | 294-298 | 8 | 180 | slipknot | ||
| view details |
|
4.1 | 17-295 | 279 | 1-13, 298-478 | 14-16, 296-297 | 13 | 181 | slipknot |
| sequence length |
490
|
| structure length |
478
|
| publication title |
Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction.
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Pseudomonas aeruginosa
|
| missing residues |
392-403
|
| total genus |
 Genus: 116
|
| ec nomenclature |
ec
2.7.13.3: Histidine kinase. |
| pdb deposition date | 2008-01-25 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08446 | PAS_2 | PAS fold |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
