3CSYI

Crystal structure of the trimeric prefusion ebola virus glycoprotein in complex with a neutralizing antibody from a human survivor
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 77-141 65 1-76 146-280 142-145 76 135 slipknot
Chain Sequence
RSIPLGVIHNSVLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQA------------------------YSTTIRYQATGFGTNEVEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNRKIRSEELSFTV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 79-139 61 1-14, 147-236 15-78, 140-146 14 90 slipknot
view details
1.1 83-140 58 1-78, 146-236 79-82, 141-145 78 91 slipknot
sequence length 280
structure length 236
publication title Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor.
pubmed doi rcsb
molecule tags Immune system/viral protein
molecule keywords Fab KZ52 heavy chain
source organism Homo sapiens
missing residues 160-183, 249-268
total genus Genus: 50
ec nomenclature
pdb deposition date 2008-04-10
KnotProt deposition date 2014-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01611 Filo_glycop Filovirus glycoprotein
Image from the rcsb pdb (www.rcsb.org)
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