3FR8A

Rice ketolacid reductoisomerase in complex with mg2+-nadph
Slipknot S 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 273-388 116 1-248, 444-501 249-272, 389-443 248 58 slipknot
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41 239-442 204 1-238, 443-501 238 58 slipknot
Chain Sequence
AAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 237-452 216 1-236, 453-501 236 49 knot
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3.2 236-439 204 1-235 458-501 440-457 235 44 slipknot
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3.2 245-461 217 1-236, 487-501 237-244, 462-486 236 15 slipknot
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3.2 245-486 242 1-236, 490-501 237-244, 487-489 236 12 slipknot
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3.2 246-462 217 1-244, 487-501 245-245, 463-486 244 15 slipknot
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3.2 246-486 241 1-244, 490-501 245-245, 487-489 244 12 slipknot
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2.3 247-438 192 1-234, 452-501 235-246, 439-451 234 50 slipknot
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2.1 259-391 133 1-237, 417-501 238-258, 392-416 237 85 slipknot
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1.1 277-394 118 1-243, 440-501 244-276, 395-439 243 62 slipknot
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2.1 277-439 163 1-246, 441-501 247-276, 440-440 246 61 slipknot
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3.1 269-392 124 1-258, 395-501 259-268, 393-394 258 107 slipknot
publication title Conformational changes in a plant ketol-acid reductoisomerase upon Mg(2+) and NADPH binding as revealed by two crystal structures
pubmed doi rcsb
structure length 501
molecule tags Oxidoreductase
source organism Oryza sativa japonica group
sequence length 501
molecule keywords Putative ketol-acid reductoisomerase (Os05g0573700 protein)
ec nomenclature ec 1.1.1.86: Ketol-acid reductoisomerase.
ec 1.1.1.86: Ketol-acid reductoisomerase (NADP(+)).
pdb deposition date 2009-01-08
KnotProt deposition date 2018-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01450 IlvC Acetohydroxy acid isomeroreductase, catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 3fr8A02
3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like Domain 3fr8A01
3FR7A 1YRLA 1R4NB 3FR8A 1QMGA 3ULKA 1YVEI 1R4MB
chains in the KnotProt database with same CATH superfamily
3RDPA 3M4NA 3FSGA 3L04A 1E2NA 1KI6A 4IVPA 3KZKA 1QMGA 3ULKA 1DBIA 1R4MB 3L02A 2FG7C 1VTKA 1GKUB 4JBXA 3FR8A 1II9A 2FG6C 2G7MC 1KI6B 3F0TA 1LNSA 1E2HA 1KI4A 1JS1X 3KZMA 1E2JA 3M5DA 1QHIA 1YRLA 1OF1A 3KZCA 3L05A 4IVRA 1E2IA 1KI3A 1P75A 2VTKA 1YH1A 1F48A 1YVEI 1E2LA 1KI8A 3M4JA 2XTJA 1E2PA 4JBYA 2FG7X 3M5CA 3FR7A 1KI2A 1P72A 1OSNA 3KZOA 1P7CA 2KI5A 3L06A 1E2MA 1KI7A 4IVQA 1R4NB 1KIMA 1P6XA 3VTKA 1E2KA 1P73A 3KZNA
chains in the KnotProt database with same CATH topology
3FR7A 1YRLA 1R4NB 3FR8A 1QMGA 3ULKA 1YVEI 1R4MB
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3FR7 A;  1YRL A;  1R4N B;  3FR8 A;  1QMG A;  3ULK A;  1YVE I;  1R4M B; 
#chains in the KnotProt database with same CATH topology
 3RDP A;  3M4N A;  3FSG A;  3L04 A;  1E2N A;  1KI6 A;  4IVP A;  3KZK A;  1QMG A;  3ULK A;  1DBI A;  1R4M B;  3L02 A;  2FG7 C;  1VTK A;  1GKU B;  4JBX A;  3FR8 A;  1II9 A;  2FG6 C;  2G7M C;  1KI6 B;  3F0T A;  1LNS A;  1E2H A;  1KI4 A;  1JS1 X;  3KZM A;  1E2J A;  3M5D A;  1QHI A;  1YRL A;  1OF1 A;  3KZC A;  3L05 A;  4IVR A;  1E2I A;  1KI3 A;  1P75 A;  2VTK A;  1YH1 A;  1F48 A;  1YVE I;  1E2L A;  1KI8 A;  3M4J A;  2XTJ A;  1E2P A;  4JBY A;  2FG7 X;  3M5C A;  3FR7 A;  1KI2 A;  1P72 A;  1OSN A;  3KZO A;  1P7C A;  2KI5 A;  3L06 A;  1E2M A;  1KI7 A;  4IVQ A;  1R4N B;  1KIM A;  1P6X A;  3VTK A;  1E2K A;  1P73 A;  3KZN A; 
#chains in the KnotProt database with same CATH homology
 3FR7 A;  1YRL A;  1R4N B;  3FR8 A;  1QMG A;  3ULK A;  1YVE I;  1R4M B; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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