| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 18-256 | 239 | 1-17, 257-489 | 17 | 233 | knot |
Chain Sequence |
PVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIR---ERQAGNVLQRLQRDPERDIYHTDNWGDC----------CGVLAIRFGWIFWFRHEEVHG-----PSGPRLTPRGSFEAWEE--------------VVRGHSTPWSETDLAIAEKLRLDLMELCL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 16-294 | 279 | 1-15, 295-457 | 15 | 163 | knot | ||||
| view details |
 |
3.2m | 16-253 | 238 | 1-15 | 264-457 | 254-263 | 15 | 194 | slipknot | ||
| view details |
|
3.2m | 16-264 | 249 | 1-15 | 292-457 | 265-291 | 15 | 166 | slipknot | ||
| view details |
|
3.2m | 18-291 | 274 | 1-11, 299-457 | 12-17, 292-298 | 11 | 159 | slipknot | |||
| view details |
|
4.1 | 18-298 | 281 | 299-457 | 1-15 | 16-17 | 15 | 158 | slipknot | ||
| view details |
 |
3.2 | 20-295 | 276 | 296-457 | 1-17 | 18-19 | 17 | 161 | slipknot | ||
| view details |
|
3.2 | 21-334 | 314 | 1-19, 434-457 | 20-20, 335-433 | 19 | 24 | slipknot |
| sequence length |
489
|
| structure length |
457
|
| publication title |
Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Pseudomonas aeruginosa
|
| missing residues |
363-365, 391-400, 412-416, 429-442
|
| total genus |
 Genus: 120
|
| ec nomenclature |
ec
2.7.13.3: Histidine kinase. |
| pdb deposition date | 2009-02-07 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00360 | PHY | Phytochrome region |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
