3V8FA

Crystal structure of crosslinked gltph v216c-m385c mutant
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 44-319 276 1-43 338-410 320-337 43 73 slipknot
Chain Sequence
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYCMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYACILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 45-309 265 1-44 345-410 310-344 44 66 slipknot
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2.1 42-357 316 1-36, 367-410 37-41, 358-366 36 44 slipknot
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1.1 49-329 281 1-44, 338-410 45-48, 330-337 44 73 slipknot
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1.1 57-316 260 1-47, 326-410 48-56, 317-325 47 85 slipknot
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1.1 60-326 267 1-49, 342-410 50-59, 327-341 49 69 slipknot
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1.1 59-360 302 1-52, 368-410 53-58, 361-367 52 43 slipknot
publication title Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb
structure length 410
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 410
molecule keywords sodium-coupled L-aspartate transporter
ec nomenclature
pdb deposition date 2011-12-22
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Proton glutamate symport protein 3v8fA00
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH superfamily
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH topology
3KBCA 2NWLA 3V8FA 1XFHA 2NWWA 2NWXA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
#chains in the KnotProt database with same CATH topology
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
#chains in the KnotProt database with same CATH homology
 3KBC A;  2NWL A;  3V8F A;  1XFH A;  2NWW A;  2NWX A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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