3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 114
Slipknot S 41 -31 -31 41 -31 -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 242-352 111 353-387 1-29 30-241 29 34 slipknot
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41 227-368 142 1-7, 378-387 8-226, 369-377 7 10 slipknot
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVE---VSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 115-350 236 1-64, 362-384 65-114, 351-361 64 23 slipknot
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3.1m 117-350 234 1-114, 362-384 115-116, 351-361 114 23 slipknot
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2.1m 184-350 167 1-86, 363-384 87-183, 351-362 86 22 slipknot
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3.1m 206-350 145 1-184, 362-384 185-205, 351-361 184 23 slipknot
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2.1m 215-373 159 1-185, 384-384 186-214, 374-383 185 1 slipknot
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3.1m 217-350 134 1-205, 362-384 206-216, 351-361 205 23 slipknot
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3.1m 217-361 145 1-199, 366-384 200-216, 362-365 199 19 slipknot
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2.1m 218-353 136 1-216, 361-384 217-217, 354-360 216 24 slipknot
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3.2m 232-361 130 1-216, 378-384 217-231, 362-377 216 7 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling