3ZQ5A

Structure of the y263f mutant of the cyanobacterial phytochrome cph1
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 25-274 250 1-24, 275-517 24 243 knot
Chain Sequence
ATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQAEEHHHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 23-311 289 1-22, 312-517 22 206 knot
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3.2m 23-268 246 1-22 278-517 269-277 22 240 slipknot
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4.1 19-277 259 1-18 284-517 278-283 18 234 slipknot
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3.2m 23-292 270 1-22 311-517 293-310 22 207 slipknot
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4.1 27-311 285 1-22, 469-517 23-26, 312-468 22 49 slipknot
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3.2 25-275 251 1-19, 282-517 20-24, 276-281 19 236 slipknot
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3.2 25-281 257 1-19, 285-517 20-24, 282-284 19 233 slipknot
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3.2 27-469 443 470-517 1-22 23-26 22 47 slipknot
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3.2 28-317 290 1-26, 423-517 27-27, 318-422 26 95 slipknot
sequence length 517
structure length 517
publication title Spectroscopy and a High-Resolution Crystal Structure of Tyr263 Mutants of Cyanobacterial Phytochrome Cph1.
pubmed doi rcsb
molecule tags Transferase
molecule keywords PHYTOCHROME-LIKE PROTEIN CPH1
source organism Synechocystis sp. pcc 6803
total genus Genus: 154
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2011-06-07
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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