| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 46-310 | 265 | 1-45 | 368-404 | 311-367 | 45 | 37 | slipknot |
Chain Sequence |
LQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASCVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYCFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 38-327 | 290 | 1-37 | 342-404 | 328-341 | 37 | 63 | slipknot | ||
| view details |
 |
3.1 | 22-316 | 295 | 1-4, 328-404 | 5-21, 317-327 | 4 | 77 | slipknot | |||
| view details |
|
3.1 | 25-316 | 292 | 1-21, 328-404 | 22-24, 317-327 | 21 | 77 | slipknot | |||
| view details |
|
3.1 | 49-349 | 301 | 1-10, 370-404 | 11-48, 350-369 | 10 | 35 | slipknot | |||
| view details |
|
3.1 | 35-316 | 282 | 1-24, 328-404 | 25-34, 317-327 | 24 | 77 | slipknot | |||
| view details |
|
2.1 | 54-316 | 263 | 1-37, 336-404 | 38-53, 317-335 | 37 | 69 | slipknot | |||
| view details |
 |
1.1 | 53-303 | 251 | 1-45, 314-404 | 46-52, 304-313 | 45 | 91 | slipknot | |||
| view details |
|
1.1 | 53-348 | 296 | 1-46, 355-404 | 47-52, 349-354 | 46 | 50 | slipknot |
| sequence length |
404
|
| structure length |
404
|
| publication title |
Binding thermodynamics of a glutamate transporter homolog.
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
425aa long hypothetical proton glutamate symport protein
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 104
|
| ec nomenclature | |
| pdb deposition date | 2013-01-30 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
