4JKJA

Crystal structure of the s18y variant of ubiquitin carboxy-terminal hydrolase l1
Knot K -52 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 6-164 159 1-5 217-223 165-216 5 7 slipknot
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-52 6-220 215 1-5, 221-223 5 3 knot
Chain Sequence
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 6-160 155 1-5 168-223 161-167 5 56 slipknot
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3.1m 6-170 165 1-5 176-223 171-175 5 48 slipknot
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2.1m 7-181 175 1-6 191-223 182-190 6 33 slipknot
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3.1m 9-197 189 1-8 205-223 198-204 8 19 slipknot
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3.1m 10-204 195 1-9 216-223 205-215 9 8 slipknot
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3.1m 5-215 211 1-4 217-223 216-216 4 7 slipknot
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2.1m 8-184 177 1-6, 191-223 7-7, 185-190 6 33 slipknot
publication title Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
rcsb
structure length 223
molecule tags Hydrolase
source organism Homo sapiens
sequence length 223
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L1
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-03-09
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Image from the rcsb pdb (www.rcsb.org)
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