4O6CA

West nile virus non-structural protein 1 (ns1) form 2 crystal
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 77
Slipknot S +31 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 88-151 64 152-353 1-43 44-87 43 201 slipknot
Chain Sequence
ADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTE---------------APELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 60-138 79 139-338 1-45 46-59 45 199 slipknot
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2.1 82-136 55 137-338 1-73 74-81 73 201 slipknot
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3.1 87-157 71 1-81, 185-338 82-86, 158-184 81 154 slipknot
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3.1 88-173 86 1-81, 203-338 82-87, 174-202 81 136 slipknot
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3.1 88-213 126 214-338 1-81 82-87 81 124 slipknot
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3.1 87-202 116 1-81, 214-338 82-86, 203-213 81 125 slipknot
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3.1 91-136 46 137-338 1-84 85-90 84 201 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling