4O6DA

West nile virus non-structural protein 1 (ns1) form 1 crystal
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 93
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 63-155 93 1-62, 156-359 62 204 knot
Chain Sequence
LYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTAT---------------------ANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 56-135 80 1-55, 136-338 55 203 knot
view details
3.1 63-206 144 1-57, 278-338 58-62, 207-277 57 61 slipknot
view details
2.1 64-140 77 1-58, 152-338 59-63, 141-151 58 187 slipknot
view details
2.1 65-145 81 1-58, 229-338 59-64, 146-228 58 110 slipknot
view details
3.1 65-229 165 1-62, 256-338 63-64, 230-255 62 83 slipknot
view details
3.1 65-255 191 1-58, 316-338 59-64, 256-315 58 23 slipknot
view details
2.1 65-315 251 1-58, 336-338 59-64, 316-335 58 3 slipknot
view details
3.1 65-335 271 336-338 1-58 59-64 58 2 slipknot
view details
2.1 66-146 81 1-64, 226-338 65-65, 147-225 64 113 slipknot
view details
2.1 66-228 163 1-62, 235-338 63-65, 229-234 62 104 slipknot
view details
2.1 66-260 195 1-64, 311-338 65-65, 261-310 64 28 slipknot
sequence length 359
structure length 338
publication title Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords NS1
source organism West nile virus
missing residues 115-135
total genus Genus: 93
ec nomenclature
pdb deposition date 2013-12-20
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00948 Flavi_NS1 Flavivirus non-structural Protein NS1
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling