4OYEA

Crystal structure of gltph r397a in apo
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 132
Slipknot S +31 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 54-317 264 1-53 365-409 318-364 53 45 slipknot
Chain Sequence
IEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGG-------APPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 41-296 256 1-40 318-402 297-317 40 85 slipknot
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2.1 40-322 283 1-39 338-402 323-337 39 65 slipknot
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2.1 38-344 307 1-37 359-402 345-358 37 44 slipknot
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3.1 36-317 282 1-19, 323-402 20-35, 318-322 19 80 slipknot
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2.1 40-317 278 1-35, 323-402 36-39, 318-322 35 80 slipknot
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3.1 41-317 277 1-39, 326-402 40-40, 318-325 39 77 slipknot
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1.1 52-305 254 1-40, 316-402 41-51, 306-315 40 87 slipknot
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2.1 55-314 260 1-46, 324-402 47-54, 315-323 46 79 slipknot
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1.1 61-348 288 1-46, 359-402 47-60, 349-358 46 44 slipknot
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2.1 61-325 265 1-49, 335-402 50-60, 326-334 49 68 slipknot
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2.1 61-314 254 1-54, 324-402 55-60, 315-323 54 79 slipknot
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2.1 61-323 263 1-50, 326-402 51-60, 324-325 50 77 slipknot
sequence length 409
structure length 402
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
source organism Pyrococcus horikoshii
missing residues 113-119
total genus Genus: 132
ec nomenclature
pdb deposition date 2014-02-11
KnotProt deposition date 2014-09-21
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling