4P0OA

Cleaved serpin 42da
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S 41 -31 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 230-343 114 344-378 1-30 31-229 30 34 slipknot
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41 214-360 147 1-213 369-378 361-368 213 10 slipknot
Chain Sequence
AAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMAVRRK-------EPIEFFADHPFTYVLVHQKDLPLFWGSVVRLEE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 171-338 168 1-44, 351-371 45-170, 339-350 44 21 slipknot
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3.1m 165-364 200 365-371 1-44 45-164 44 6 slipknot
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3.1m 104-350 247 1-47, 352-371 48-103, 351-351 47 20 slipknot
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3.1m 166-350 185 1-104, 353-371 105-165, 351-352 104 19 slipknot
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3.1m 204-364 161 365-371 1-169 170-203 169 6 slipknot
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3.1m 204-338 135 1-171, 350-371 172-203, 339-349 171 22 slipknot
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3.1m 203-361 159 1-171, 365-371 172-202, 362-364 171 7 slipknot
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3.2m 211-351 141 1-203, 361-371 204-210, 352-360 203 11 slipknot
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3.2m 216-350 135 1-204, 365-371 205-215, 351-364 204 7 slipknot
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3.1m 229-340 112 1-218, 350-371 219-228, 341-349 218 22 slipknot
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3.1m 229-349 121 1-218, 351-371 219-228, 350-350 218 21 slipknot
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3.1m 227-364 138 365-371 1-218 219-226 218 6 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling