4WGWA

Staphylococcus capitis divalent metal ion transporter (dmt) in complex with manganese
Slipknot S +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 23-188 166 189-395 1-5 6-22 5 206 slipknot
Chain Sequence
VGYMDPGNWITSMQGGAQYGYTLLFVILISSLAAMLLQSMTVRLGIATGKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIAEVIGSAIALDLIFGIPLIVGALITVFDVFLLLFIMRFGFRKIEAIVGTLIFTVLAIFVFEVFISSPQLTDILNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKYDRHDNEEKAQAIKYATIDSNLQLSIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLLVFSQVFLSIALPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 21-347 327 1-20, 348-395 20 48 knot
view details
1.1 19-179 161 1-18 190-395 180-189 18 206 slipknot
view details
2.1 18-191 174 1-17 218-395 192-217 17 178 slipknot
view details
2.3 11-229 219 1-10 237-395 230-236 10 159 slipknot
view details
3.2 9-249 241 1-8 273-395 250-272 8 123 slipknot
view details
3.2 6-272 267 1-5 280-395 273-279 5 116 slipknot
view details
2.1 17-217 201 1-6, 229-395 7-16, 218-228 6 167 slipknot
view details
1.1 17-228 212 1-6, 232-395 7-16, 229-231 6 164 slipknot
view details
1.1 19-215 197 1-16, 229-395 17-18, 216-228 16 167 slipknot
view details
3.1 22-194 173 1-17, 213-395 18-21, 195-212 17 183 slipknot
view details
3.1 22-212 191 1-17, 216-395 18-21, 213-215 17 180 slipknot
view details
2.1 28-192 165 1-18, 214-395 19-27, 193-213 18 182 slipknot
view details
2.1 29-197 169 1-27, 212-395 28-28, 198-211 27 184 slipknot
view details
1.1 30-223 194 1-19, 235-395 20-29, 224-234 19 161 slipknot
publication title Crystal structure of a SLC11 (NRAMP) transporter reveals the basis for transition-metal ion transport.
pubmed doi rcsb
structure length 395
molecule tags Transport protein
source organism Staphylococcus capitis
sequence length 395
molecule keywords Divalent metal cation transporter MntH
ec nomenclature
pdb deposition date 2014-09-19
KnotProt deposition date 2015-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01566 Nramp Natural resistance-associated macrophage protein
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling