4WKKA

The photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an exocyclic double bond at pyrrole ring a.
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 15-249 235 1-14, 250-488 14 239 knot
Chain Sequence
LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKTEE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 13-285 273 1-12, 286-488 12 203 knot
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3.2m 12-245 234 1-11 254-488 246-253 11 235 slipknot
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4.1 9-253 245 1-8 259-488 254-258 8 230 slipknot
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3.2m 13-257 245 1-12 265-488 258-264 12 224 slipknot
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3.2m 13-264 252 1-12 286-488 265-285 12 203 slipknot
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4.1 17-445 429 446-488 1-12 13-16 12 42 slipknot
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3.2 17-287 271 1-12, 445-488 13-16, 288-444 12 44 slipknot
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4.1 16-444 429 1-12, 446-488 13-15, 445-445 12 43 slipknot
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3.2 18-319 302 1-16, 438-488 17-17, 320-437 16 51 slipknot
sequence length 488
structure length 488
publication title The photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an exocyclic double bond in pyrrole ring A.
rcsb
molecule tags Signaling protein
molecule keywords Bacteriophytochrome protein
source organism Agrobacterium tumefaciens
ec nomenclature
pdb deposition date 2014-10-02
KnotProt deposition date 2015-12-23
Image from the rcsb pdb (www.rcsb.org)
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