4X3MA

Crystal structure of ttha0275 from thermus thermophilus (hb8) in complex with adenosine in space group p212121
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 186-225 40 1-185, 226-260 185 35 knot
Chain Sequence
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVFALPVYPVAEGEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAPL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 184-228 45 1-183, 229-260 183 32 knot
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2.1 184-223 40 1-183 229-260 224-228 183 32 slipknot
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3.1 185-233 49 1-183, 241-260 184-184, 234-240 183 20 slipknot
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3.1 187-238 52 239-260 1-183 184-186 183 21 slipknot
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3.1 186-228 43 1-183, 236-260 184-185, 229-235 183 25 slipknot
publication title Crystal Structure of TTHA0275 from Thermus thermophilus (HB8)
rcsb
structure length 260
molecule tags Transferase
source organism Thermus thermophilus
sequence length 260
molecule keywords RNA 2'-O ribose methyltransferase
ec nomenclature
pdb deposition date 2014-12-01
KnotProt deposition date 2015-11-11
Image from the rcsb pdb (www.rcsb.org)
4X3LA 4X3MA 1IPAA
similar chains in the KnotProt database (40% sequence similarity)
4X3LB 4X3MB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 4X3L A;  4X3M A;  1IPA A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 4X3L B;  4X3M B; 
           

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