5GM6J

Cryo-em structure of the activated spliceosome (bact complex) at 3.5 angstrom resolution
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
-31 19-68 50 1-18, 69-103 18 35 knot
Chain Sequence
SRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 19-71 53 1-18, 72-103 18 32 knot
sequence length 103
structure length 103
publication title Structure of a yeast activated spliceosome at 3.5 angstrom resolution
pubmed doi rcsb
molecule tags Rna binding protein/rna
molecule keywords Pre-mRNA-splicing factor 8
total genus Genus: 9
ec nomenclature
pdb deposition date 2016-07-12
KnotProt deposition date 2016-10-22
Image from the rcsb pdb (www.rcsb.org)
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