5A7ZA

Crystal structure of sulfolobus acidocaldarius trm10 at 2.1 angstrom resolution.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 162-210 49 1-161, 211-250 161 40 knot
Chain Sequence
RGSHMTLAKVFSQKLRELGISSIYIGHERPSLQSLAIKMLLKNYGLVEERREGMLITQDHGIKLISGKGTETSRYTFRKGGKKVSIHLPEYPKMVIDLGLFEFLNEEEKEKTLLQVDLCLSVIRKFLWDGNLTVVGKADYVLGRANIVQSLSLSDEDNPVILDPYGDVVATDQILRDHNVFVIGGIVDKGRRLDRATERLALSRGYSFPRVKIQLRGSIIGVPDEINKILEIILRVKELDQSLEEAIISL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 161-211 51 1-160, 212-250 160 39 knot
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2.1 159-208 50 1-158 214-250 209-213 158 37 slipknot
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3.1 162-220 59 1-160, 233-250 161-161, 221-232 160 18 slipknot
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3.1 163-220 58 1-161, 233-250 162-162, 221-232 161 18 slipknot
publication title Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
pubmed doi rcsb
structure length 250
molecule tags Transferase
source organism Sulfolobus acidocaldarius
sequence length 250
molecule keywords TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
ec nomenclature
pdb deposition date 2015-07-10
KnotProt deposition date 2016-01-13
Image from the rcsb pdb (www.rcsb.org)
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