| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 29-268 | 240 | 1-28, 269-496 | 28 | 228 | knot |
Chain Sequence |
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGG------KDDLGPRHSWDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGAL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 27-309 | 283 | 1-26, 310-496 | 26 | 187 | knot | ||||
| view details |
 |
3.2m | 27-264 | 238 | 1-26 | 273-496 | 265-272 | 26 | 224 | slipknot | ||
| view details |
|
3.2m | 27-274 | 248 | 1-26 | 285-496 | 275-284 | 26 | 212 | slipknot | ||
| view details |
|
3.2m | 26-284 | 259 | 1-25 | 286-496 | 285-285 | 25 | 211 | slipknot | ||
| view details |
|
3.2m | 27-287 | 261 | 1-26 | 310-496 | 288-309 | 26 | 187 | slipknot |
| sequence length |
496
|
| structure length |
490
|
| publication title |
Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Deinococcus radiodurans
|
| missing residues |
448-453
|
| total genus |
 Genus: 130
|
| ec nomenclature | |
| pdb deposition date | 2015-06-20 |
| KnotProt deposition date | 2018-09-12 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
