5G2UA

Structure of bt1596,a 2-o gag sulfatase
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 6-270 265 1-5 295-465 271-294 5 171 slipknot
Chain Sequence
EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNP--EPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREIL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 4-278 275 1-3 292-463 279-291 3 172 slipknot
sequence length 465
structure length 463
publication title Metabolism of Host Gags by the Human Gut Bacterium Bacteroides Thetaiotaomicron
rcsb
molecule tags Hydrolase
molecule keywords 2-O GLYCOSAMINOGLYCAN SULFATASE
source organism Bacteroides thetaiotaomicron
missing residues 153-154
ec nomenclature
pdb deposition date 2016-04-14
KnotProt deposition date 2017-05-24
Image from the rcsb pdb (www.rcsb.org)
5G2UA 3B5QA
similar chains in the KnotProt database (40% sequence similarity)
5G2TA 5G2TB 5G2TC 5G2TD 3B5QB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5G2U A;  3B5Q A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5G2T A;  5G2T B;  5G2T C;  5G2T D;  3B5Q B; 
           

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