5GMBA

Methylation at position 32 of trna catalyzed by trmj alters oxidative stress response in pseudomonas aeruiginosa
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 83-135 53 1-82, 136-171 82 36 knot
Chain Sequence
FQSMMLDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAARVVDTLEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 81-137 57 1-80, 138-171 80 34 knot
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2.1 79-133 55 1-78 139-171 134-138 78 33 slipknot
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3.1 82-137 56 138-171 1-80 81-81 80 33 slipknot
publication title Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruiginosa
rcsb
structure length 171
molecule tags Transferase
source organism Pseudomonas aeruginosa
sequence length 171
molecule keywords tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
ec nomenclature
pdb deposition date 2016-07-13
KnotProt deposition date 2016-10-28
Image from the rcsb pdb (www.rcsb.org)
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