5I5LA

The photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 13-245 233 1-12, 246-484 12 239 knot
Chain Sequence
SCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSE--GSWLIWFRPEVIKTVRWGGDPHKTVQERI--HPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 12-286 275 1-11, 287-480 11 194 knot
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3.2m 11-242 232 1-10 250-480 243-249 10 231 slipknot
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3.2m 11-255 245 1-10 265-480 256-264 10 216 slipknot
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3.2m 11-267 257 1-10 285-480 268-284 10 196 slipknot
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4.1 14-283 270 1-7, 393-480 8-13, 284-392 7 88 slipknot
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4.1 15-285 271 1-11, 426-480 12-14, 286-425 11 55 slipknot
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3.2 15-425 411 1-11, 437-480 12-14, 426-436 11 44 slipknot
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4.1 15-441 427 442-480 1-11 12-14 11 38 slipknot
sequence length 484
structure length 480
publication title Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb
molecule tags Signaling protein
molecule keywords Bacteriophytochrome protein
source organism Agrobacterium fabrum str. c58
missing residues 409-410, 438-439
ec nomenclature
pdb deposition date 2016-02-15
KnotProt deposition date 2016-08-03
Image from the rcsb pdb (www.rcsb.org)
5HSQA 5I5LA 4R6LA 4R70A 4S21A
similar chains in the KnotProt database (40% sequence similarity)
4R70B 4S21B 4R6LB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5HSQ A;  5I5L A;  4R6L A; 
               
               
#similar chains, but unknotted
 4R70 A;  4S21 A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 4R70 B;  4S21 B;  4R6L B; 
           

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