5I5LA

The photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 13-245 233 1-12, 246-484 12 239 knot
Chain Sequence
SCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSE--GSWLIWFRPEVIKTVRWGGDPHKTVQERI--HPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 12-286 275 1-11, 287-480 11 194 knot
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3.2m 11-242 232 1-10 250-480 243-249 10 231 slipknot
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3.2m 11-255 245 1-10 265-480 256-264 10 216 slipknot
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3.2m 11-267 257 1-10 285-480 268-284 10 196 slipknot
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4.1 14-283 270 1-7, 393-480 8-13, 284-392 7 88 slipknot
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4.1 15-285 271 1-11, 426-480 12-14, 286-425 11 55 slipknot
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3.2 15-425 411 1-11, 437-480 12-14, 426-436 11 44 slipknot
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4.1 15-441 427 442-480 1-11 12-14 11 38 slipknot
missing residues 409-410, 438-439
publication title Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb
structure length 480
molecule tags Signaling protein
source organism Agrobacterium fabrum str. c58
sequence length 484
molecule keywords Bacteriophytochrome protein
ec nomenclature
pdb deposition date 2016-02-15
KnotProt deposition date 2016-08-03
Image from the rcsb pdb (www.rcsb.org)
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