5J4NA

Crystal structure of the l-arginine/agmatine antiporter adic in complex with agmatine at 2.6 angstroem resolution
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-205 170 206-437 1-21 22-35 21 231 slipknot
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41 14-241 228 1-13 284-437 242-283 13 154 slipknot
Chain Sequence
ADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 12-236 225 1-11 250-437 237-249 11 188 slipknot
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4.1 6-249 244 1-5 256-437 250-255 5 182 slipknot
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4.1 9-261 253 1-8 270-437 262-269 8 168 slipknot
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3.2 16-270 255 1-15 286-437 271-285 15 152 slipknot
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3.2 14-260 247 1-7, 267-437 8-13, 261-266 7 171 slipknot
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1.1 26-219 194 1-15, 229-437 16-25, 220-228 15 209 slipknot
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3.2 23-264 242 1-15, 282-437 16-22, 265-281 15 156 slipknot
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2.1 40-289 250 1-15, 353-437 16-39, 290-352 15 85 slipknot
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2.1 39-364 326 365-437 1-16 17-38 16 72 slipknot
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2.1 33-208 176 1-18, 227-437 19-32, 209-226 18 211 slipknot
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2.1 36-203 168 1-19, 218-437 20-35, 204-217 19 220 slipknot
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2.1 36-217 182 1-33, 221-437 34-35, 218-220 33 217 slipknot
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2.1 36-220 185 1-32, 227-437 33-35, 221-226 32 211 slipknot
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2.1 33-226 194 1-25, 229-437 26-32, 227-228 25 209 slipknot
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1.1 38-230 193 1-26, 246-437 27-37, 231-245 26 192 slipknot
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1.1 40-223 184 1-28, 235-437 29-39, 224-234 28 203 slipknot
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1.1 40-234 195 1-37, 244-437 38-39, 235-243 37 194 slipknot
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1.1 41-227 187 1-39, 235-437 40-40, 228-234 39 203 slipknot
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1.1 41-236 196 1-39, 241-437 40-40, 237-240 39 197 slipknot
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1.1 42-226 185 1-40, 244-437 41-41, 227-243 40 194 slipknot
sequence length 437
structure length 437
publication title Insights into the molecular basis for substrate binding and specificity of the wild-type L-arginine/agmatine antiporter AdiC
doi rcsb
molecule tags Transport protein
molecule keywords Arginine/agmatine antiporter
source organism Escherichia coli o157:h7
ec nomenclature
pdb deposition date 2016-04-01
KnotProt deposition date 2016-09-01
Image from the rcsb pdb (www.rcsb.org)
5J4IA 5J4NA 3L1LA 3OB6A 3NCYA 3LRBA 3LRCA
similar chains in the KnotProt database (40% sequence similarity)
5J4IB 5J4NB 3OB6B 3NCYB 3NCYC 3NCYD 3LRBB 3LRCB 3LRCC 3LRCD
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5J4I A;  5J4N A;  3L1L A;  3OB6 A;  3NCY A;  3LRB A;  3LRC A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5J4I B;  5J4N B;  3OB6 B;  3NCY B;  3NCY C;  3NCY D;  3LRB B;  3LRC B;  3LRC C;  3LRC D; 
           

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