5JPQe

Cryo-em structure of the 90s pre-ribosome
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 153-197 45 1-152, 198-225 152 28 knot
Chain Sequence
PPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLDISEARPDI-----THQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 138-185 48 1-137, 186-211 137 26 knot
view details
2.1 62-182 121 1-19, 186-211 20-61, 183-185 19 26 slipknot
missing residues 29-37, 51-55
publication title Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
pubmed doi rcsb
structure length 211
molecule tags Ribosome
sequence length 225
molecule keywords WD40 domain proteins
ec nomenclature
pdb deposition date 2016-05-04
KnotProt deposition date 2016-07-29
Image from the rcsb pdb (www.rcsb.org)
5FAIA 3OIIA 3OINA 2V3KA 2V3JA 3OIJA 5OQLe 5WYKE1 5JPQe
similar chains in the KnotProt database (40% sequence similarity)
3OIIB 3OINB 3OIJB 5OQLf 5WLCSJ 5WLCSK 5WYJE1 5WYJE2 5WYKE2 5TZSj 5TZSk 5JPQf
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5FAI A;  3OII A;  3OIN A;  2V3K A;  2V3J A;  3OIJ A;  5OQL e;  5WYK E1;  5JPQ e; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 3OII B;  3OIN B;  3OIJ B;  5OQL f;  5WLC SJ;  5WLC SK;  5WYJ E1;  5WYJ E2;  5WYK E2;  5TZS j;  5TZS k;  5JPQ f; 
           

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