5K6BF

Crystal structure of prefusion-stabilized rsv f single-chain 9 ds-cav1 variant.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 30-227 198 1-29 236-442 228-235 29 207 slipknot
Chain Sequence
QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATNNGSGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSRTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLA
sequence length 442
structure length 442
publication title Iterative structure-based improvement of a fusion-glycoprotein vaccine against RSV.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords Fusion glycoprotein F0
source organism Human respiratory syncytial virus a
ec nomenclature
pdb deposition date 2016-05-24
KnotProt deposition date 2016-09-02
Image from the rcsb pdb (www.rcsb.org)
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 31-229 199 1-30 235-442 230-234 30 208 slipknot
5K6BF 5W23A 5K6CF 4ZYPA 4CCFA 6APBA 3RKIA
similar chains in the KnotProt database (40% sequence similarity)
5EA4F 5C69A 5C6BF 5WB0F 5KWWF 5EA8F 5K6FF 5TDGA 5TDGB 5TDGC 5EA3F 4CCFB 4CCFC 4CCFD 4CCFE 4CCFF 5EA6F 5K6HF 5EA7F 5UDEF 5U68A 5U68B 5U68C 5K6IF 5TOJA 5TOJB 5TOJC 5UDCA 5UDCD 5UDCF 5K6GF 5EA5F 6APBB 6APBC 5W23B 5W23C 5TPNA 3RKIB 3RKIC 4JHWF 6APDA 6APDB 6APDC 5TDLA 5TOKA 5TOKB 5TOKC 5UDDA 5UDDB 5UDDC 5UDDD 5UDDE 5UDDF 5UDDG 5UDDH 5UDDI 4ZYPB 4ZYPC
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5K6B F;  5W23 A;  5K6C F;  4ZYP A; 
               
               
#similar chains, but unknotted
 4CCF A;  6APB A;  3RKI A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5EA4 F;  5C69 A;  5C6B F;  5WB0 F;  5KWW F;  5EA8 F;  5K6F F;  5TDG A;  5TDG B;  5TDG C;  5EA3 F;  4CCF B;  4CCF C;  4CCF D;  4CCF E;  4CCF F;  5EA6 F;  5K6H F;  5EA7 F;  5UDE F;  5U68 A;  5U68 B;  5U68 C;  5K6I F;  5TOJ A;  5TOJ B;  5TOJ C;  5UDC A;  5UDC D;  5UDC F;  5K6G F;  5EA5 F;  6APB B;  6APB C;  5W23 B;  5W23 C;  5TPN A;  3RKI B;  3RKI C;  4JHW F;  6APD A;  6APD B;  6APD C;  5TDL A;  5TOK A;  5TOK B;  5TOK C;  5UDD A;  5UDD B;  5UDD C;  5UDD D;  5UDD E;  5UDD F;  5UDD G;  5UDD H;  5UDD I;  4ZYP B;  4ZYP C; 
           

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling