5L3Pz

Cryo-em structure of stringent response factor rela bound to ermcl-stalled ribosome complex
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 725-767 43 1-724, 768-802 724 35 knot
Chain Sequence
EFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQ--------------DNVRRMLLAMVDDFRCVVIKLAERIAHLREDERVLAAKECTNI------YAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGDRIAWLRKLVFDDRVYVFTP---------------------KGDVVDLPAGSTPLDFAYHIHSDVGHRCIG--------------------AKIGGRIVPFTYQLQMGDQIEIITQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 468-518 51 1-467, 519-545 467 27 knot
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2.1m 468-513 46 1-460, 519-545 461-467, 514-518 460 27 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling