5M87A

Crystal structure of eremococcus coleocola manganese transporter
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 58-228 171 229-494 1-37 38-57 37 265 slipknot
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41 31-273 243 1-30 330-494 274-329 30 165 slipknot
Chain Sequence
DLSLSDINSTVEVPEGHSFWKTLLAYSGPGALVAVGYMDPGNWSTSITGGQNFQYLLLSIIVISSLLAMLLQNMAAKLGIVCQLDLAQAIRARTSRRLGFIFWILTELAIMATDIAEVIGAAIALYLLFKIPIFLAVVITVLDVFLLLLLNRIGFRKIEALVVCLIFVILFVFLYQIILSQPAWHQVAKGLIPSWASVQTSPKIGGQTPLSASLGIIGATIMPHNLFLHSAISQSRKIDRTDSSKVAEAVRFSNWDSNIQLSLAMVVNALLLIMGVAVFKSGAVQDPSFFGLYQALSNPDMVSNPVLAEAARSGVLSTLFAVALLASGQNSTITGTITGQVIMEGFIHLRLPLWLRRLVTRLIAIIPVVVCVAITSHQGSLDEHQALNNLMNNSQVFLALALPFSIVPLLMLTDSAAQMGNQFKNTRWVKVMGWLTVIILTLLNLISISSQIAGFFGDNPSSQDLLLSQVISIGIILAMIGLLIWTIIDIRRFT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 26-278 253 1-25 322-494 279-321 25 173 slipknot
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3.2 28-319 292 1-27 332-494 320-331 27 163 slipknot
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3.2 26-331 306 1-25 334-494 332-333 25 161 slipknot
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4.1 26-274 249 1-3, 279-494 4-25, 275-278 3 216 slipknot
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3.2 26-266 241 1-5, 275-494 6-25, 267-274 5 220 slipknot
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3.2 29-266 238 1-25, 277-494 26-28, 267-276 25 218 slipknot
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4.1 39-314 276 1-25, 327-494 26-38, 315-326 25 168 slipknot
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2.1 43-232 190 1-31, 253-494 32-42, 233-252 31 242 slipknot
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3.1 50-435 386 436-494 1-34 35-49 34 58 slipknot
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2.1 61-356 296 1-35, 398-494 36-60, 357-397 35 97 slipknot
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2.1 48-403 356 1-35, 423-494 36-47, 404-422 35 72 slipknot
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3.1 55-235 181 1-44, 244-494 45-54, 236-243 44 251 slipknot
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3.1 56-236 181 1-54, 244-494 55-55, 237-243 54 251 slipknot
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2.1 55-247 193 1-46, 259-494 47-54, 248-258 46 236 slipknot
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3.1 62-232 171 1-49, 250-494 50-61, 233-249 49 245 slipknot
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2.1 62-249 188 1-49, 261-494 50-61, 250-260 49 234 slipknot
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2.1 63-442 380 443-494 1-50 51-62 50 51 slipknot
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2.1 63-231 169 1-53, 240-494 54-62, 232-239 53 255 slipknot
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2.1 63-239 177 1-61, 250-494 62-62, 240-249 61 245 slipknot
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2.1 63-258 196 1-61, 261-494 62-62, 259-260 61 234 slipknot
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2.1 63-402 340 1-53, 442-494 54-62, 403-441 53 53 slipknot
publication title Structural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family.
pubmed doi rcsb
structure length 494
molecule tags Transport protein
source organism Eremococcus coleocola acs-139-v-col8
sequence length 494
molecule keywords Divalent metal cation transporter MntH
ec nomenclature
pdb deposition date 2016-10-28
KnotProt deposition date 2017-01-26
Image from the rcsb pdb (www.rcsb.org)
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