5M8AA

Crystal structure of eremococcus coleocola manganese transporter mutant e129a
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 58-227 170 228-494 1-37 38-57 37 266 slipknot
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41 31-273 243 1-30 331-494 274-330 30 164 slipknot
Chain Sequence
DLSLSDINSTVEVPEGHSFWKTLLAYSGPGALVAVGYMDPGNWSTSITGGQNFQYLLLSIIVISSLLAMLLQNMAAKLGIVCQLDLAQAIRARTSRRLGFIFWILTELAIMATDIAAVIGAAIALYLLFKIPIFLAVVITVLDVFLLLLLNRIGFRKIEALVVCLIFVILFVFLYQIILSQPAWHQVAKGLIPSWASVQTSPKIGGQTPLSASLGIIGATIMPHNLFLHSAISQSRKIDRTDSSKVAEAVRFSNWDSNIQLSLAMVVNALLLIMGVAVFKSGAVQDPSFFGLYQALSNPDMVSNPVLAEAARSGVLSTLFAVALLASGQNSTITGTITGQVIMEGFIHLRLPLWLRRLVTRLIAIIPVVVCVAITSHQGSLDEHQALNNLMNNSQVFLALALPFSIVPLLMLTDSAAQMGNQFKNTRWVKVMGWLTVIILTLLNLISISSQIAGFFGDNPSSQDLLLSQVISIGIILAMIGLLIWTIIDIRRFT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 17-269 253 1-16 281-494 270-280 16 214 slipknot
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4.1 27-275 249 1-26 316-494 276-315 26 179 slipknot
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4.1 28-318 291 1-27 330-494 319-329 27 165 slipknot
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3.2 24-274 251 1-16, 276-494 17-23, 275-275 16 219 slipknot
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4.1 26-274 249 1-23, 276-494 24-25, 275-275 23 219 slipknot
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4.1 28-275 248 1-26, 316-494 27-27, 276-315 26 179 slipknot
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3.2 39-305 267 1-30, 316-494 31-38, 306-315 30 179 slipknot
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2.1 47-229 183 1-33, 255-494 34-46, 230-254 33 240 slipknot
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2.1 44-374 331 1-34, 390-494 35-43, 375-389 34 105 slipknot
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2.1 52-450 399 1-35, 490-494 36-51, 451-489 35 5 slipknot
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2.1 50-402 353 1-36, 413-494 37-49, 403-412 36 82 slipknot
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3.1 56-232 177 1-46, 250-494 47-55, 233-249 46 245 slipknot
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2.1 62-440 379 441-494 1-49 50-61 49 53 slipknot
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2.1 62-374 313 1-50, 393-494 51-61, 375-392 50 102 slipknot
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3.1 63-237 175 1-51, 261-494 52-62, 238-260 51 234 slipknot
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2.1 63-402 340 1-51, 440-494 52-62, 403-439 51 55 slipknot
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2.1 64-237 174 1-62, 261-494 63-63, 238-260 62 234 slipknot
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1.1 64-261 198 1-54, 273-494 55-63, 262-272 54 222 slipknot
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1.1 65-262 198 1-63, 273-494 64-64, 263-272 63 222 slipknot
publication title Structural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family.
pubmed doi rcsb
structure length 494
molecule tags Transport protein
source organism Eremococcus coleocola acs-139-v-col8
sequence length 494
molecule keywords Divalent metal cation transporter MntH
ec nomenclature
pdb deposition date 2016-10-28
KnotProt deposition date 2017-01-27
Image from the rcsb pdb (www.rcsb.org)
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