5M8KA

Crystal structure of eremococcus coleocola manganese transporter mutant e129q
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 59-228 170 229-494 1-36 37-58 36 265 slipknot
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41 33-273 241 1-32 331-494 274-330 32 164 slipknot
Chain Sequence
DLSLSDINSTVEVPEGHSFWKTLLAYSGPGALVAVGYMDPGNWSTSITGGQNFQYLLLSIIVISSLLAMLLQNMAAKLGIVCQLDLAQAIRARTSRRLGFIFWILTELAIMATDIAQVIGAAIALYLLFKIPIFLAVVITVLDVFLLLLLNRIGFRKIEALVVCLIFVILFVFLYQIILSQPAWHQVAKGLIPSWASVQTSPKIGGQTPLSASLGIIGATIMPHNLFLHSAISQSRKIDRTDSSKVAEAVRFSNWDSNIQLSLAMVVNALLLIMGVAVFKSGAVQDPSFFGLYQALSNPDMVSNPVLAEAARSGVLSTLFAVALLASGQNSTITGTITGQVIMEGFIHLRLPLWLRRLVTRLIAIIPVVVCVAITSHQGSLDEHQALNNLMNNSQVFLALALPFSIVPLLMLTDSAAQMGNQFKNTRWVKVMGWLTVIILTLLNLISISSQIAGFFGDNPSSQDLLLSQVISIGIILAMIGLLIWTIIDIRRFT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 29-278 250 1-28 320-494 279-319 28 175 slipknot
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3.2 30-320 291 1-29 333-494 321-332 29 162 slipknot
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3.2 26-266 241 1-3, 278-494 4-25, 267-277 3 217 slipknot
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3.2 30-317 288 1-20, 321-494 21-29, 318-320 20 174 slipknot
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4.1 38-300 263 1-29, 310-494 30-37, 301-309 29 185 slipknot
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3.2 38-311 274 1-29, 325-494 30-37, 312-324 29 170 slipknot
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1.1 40-262 223 1-32, 271-494 33-39, 263-270 32 224 slipknot
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3.1 51-232 182 1-34, 260-494 35-50, 233-259 34 235 slipknot
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2.1 62-349 288 1-34, 390-494 35-61, 350-389 34 105 slipknot
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2.1 44-259 216 1-37, 265-494 38-43, 260-264 37 230 slipknot
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1.1 59-331 273 1-39, 345-494 40-58, 332-344 39 150 slipknot
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2.1 48-260 213 1-40, 272-494 41-47, 261-271 40 223 slipknot
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3.1 55-235 181 1-50, 254-494 51-54, 236-253 50 241 slipknot
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2.1 55-233 179 1-50, 236-494 51-54, 234-235 50 259 slipknot
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2.1 65-436 372 437-494 1-47 48-64 47 57 slipknot
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2.1 62-407 346 1-51, 431-494 52-61, 408-430 51 64 slipknot
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2.1 63-232 170 1-52, 250-494 53-62, 233-249 52 245 slipknot
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2.1 63-249 187 1-54, 253-494 55-62, 250-252 54 242 slipknot
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3.1 63-252 190 1-52, 262-494 53-62, 253-261 52 233 slipknot
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1.1 67-259 193 1-54, 271-494 55-66, 260-270 54 224 slipknot
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1.1 66-270 205 1-54, 273-494 55-65, 271-272 54 222 slipknot
publication title Structural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family.
pubmed doi rcsb
structure length 494
molecule tags Transport protein
source organism Eremococcus coleocola acs-139-v-col8
sequence length 494
molecule keywords Divalent metal cation transporter MntH
ec nomenclature
pdb deposition date 2016-10-29
KnotProt deposition date 2017-01-27
Image from the rcsb pdb (www.rcsb.org)
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