5NJ5A

E. coli microcin-processing metalloprotease tldd/e with phosphate bound
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 250-439 190 1-249 470-480 440-469 249 11 slipknot
Chain Sequence
SLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSDKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 246-441 196 1-245 468-480 442-467 245 13 slipknot
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2.1 249-462 214 1-248 471-480 463-470 248 10 slipknot
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2.1 241-470 230 1-2, 472-480 3-240, 471-471 2 9 slipknot
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3.1 247-441 195 1-245, 463-480 246-246, 442-462 245 18 slipknot
view details
2.1 250-463 214 1-248, 468-480 249-249, 464-467 248 13 slipknot
view details
3.1 249-441 193 1-246, 463-480 247-248, 442-462 246 18 slipknot
sequence length 480
structure length 480
publication title The Origins of Specificity in the Microcin-Processing Protease TldD/E.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Metalloprotease TldD
source organism Escherichia coli str. k-12 substr. mg1655
ec nomenclature
pdb deposition date 2017-03-28
KnotProt deposition date 2017-10-04
Image from the rcsb pdb (www.rcsb.org)
5NJ9A 5NJAA 5NJBA 5NJ5A
similar chains in the KnotProt database (40% sequence similarity)
5NJ9C 5NJCA 5NJCC 5NJAC 5NJFA 5NJFC 5NJBC 5NJ5C
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5NJ9 A;  5NJA A;  5NJB A;  5NJ5 A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5NJ9 C;  5NJC A;  5NJC C;  5NJA C;  5NJF A;  5NJF C;  5NJB C;  5NJ5 C; 
           

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