5NJ5B

E. coli microcin-processing metalloprotease tldd/e with phosphate bound
Slipknot S +31
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
+31 240-418 179 1-239 435-444 419-434 239 10 slipknot
Chain Sequence
VISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
sequence length 444
structure length 444
publication title The Origins of Specificity in the Microcin-Processing Protease TldD/E.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Metalloprotease TldD
source organism Escherichia coli str. k-12 substr. mg1655
ec nomenclature
pdb deposition date2017-03-28
KnotProt deposition date2017-10-04
Image from the rcsb pdb (www.rcsb.org)
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 75-420 346 1-74 433-444 421-432 74 12 slipknot
view details
3.1 99-420 322 1-74, 431-444 75-98, 421-430 74 14 slipknot
view details
3.1 113-420 308 1-85, 433-444 86-112, 421-432 85 12 slipknot
view details
3.1 229-420 192 1-112, 433-444 113-228, 421-432 112 12 slipknot
view details
3.1 233-420 188 1-228, 431-444 229-232, 421-430 228 14 slipknot
5NJ9B 5NJAB 5NJBB 5NJ5B 3TV9A 3QTDA
similar chains in the KnotProt database (40% sequence similarity)
5NJ9D 5NJCB 5NJCD 5NJAD 5NJFB 5NJFD 5NJBD 5NJ5D 3QTDB 3QTDC 3QTDD
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5NJ9 B;  5NJA B;  5NJB B;  5NJ5 B;  3TV9 A;  3QTD A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5NJ9 D;  5NJC B;  5NJC D;  5NJA D;  5NJF B;  5NJF D;  5NJB D;  5NJ5 D;  3QTD B;  3QTD C;  3QTD D; 
           

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling