5NJ9A

E. coli microcin-processing metalloprotease tldd/e with drvy angiotensin fragment bound
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 251-439 189 1-250 470-480 440-469 250 11 slipknot
Chain Sequence
SLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSDKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 249-438 190 1-248 445-480 439-444 248 36 slipknot
view details
3.1 246-444 199 1-245 467-480 445-466 245 14 slipknot
view details
2.1 249-463 215 1-248 472-480 464-471 248 9 slipknot
view details
3.1 248-444 197 1-245, 464-480 246-247, 445-463 245 17 slipknot
view details
3.1 249-444 196 1-247, 451-480 248-248, 445-450 247 30 slipknot
view details
3.1 252-445 194 1-247, 466-480 248-251, 446-465 247 15 slipknot
sequence length 480
structure length 480
publication title The Origins of Specificity in the Microcin-Processing Protease TldD/E.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Metalloprotease TldD
source organism escherichia coli k-12
ec nomenclature
pdb deposition date 2017-03-28
KnotProt deposition date 2017-10-04
Image from the rcsb pdb (www.rcsb.org)
5NJ9A 5NJAA 5NJBA 5NJ5A
similar chains in the KnotProt database (40% sequence similarity)
5NJ9C 5NJCA 5NJCC 5NJAC 5NJFA 5NJFC 5NJBC 5NJ5C
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5NJ9 A;  5NJA A;  5NJB A;  5NJ5 A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5NJ9 C;  5NJC A;  5NJC C;  5NJA C;  5NJF A;  5NJF C;  5NJB C;  5NJ5 C; 
           

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling