5NJBA

E. coli microcin-processing metalloprotease tldd/e with actinonin bound
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 251-439 189 1-250 470-480 440-469 250 11 slipknot
Chain Sequence
SLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSDKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 245-441 197 1-244 467-480 442-466 244 14 slipknot
view details
3.1 246-441 196 1-244, 466-480 245-245, 442-465 244 15 slipknot
view details
3.1 250-441 192 1-245, 466-480 246-249, 442-465 245 15 slipknot
sequence length 480
structure length 480
publication title The Origins of Specificity in the Microcin-Processing Protease TldD/E.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Metalloprotease TldD
source organism Escherichia coli k-12
ec nomenclature
pdb deposition date 2017-03-28
KnotProt deposition date 2017-10-04
Image from the rcsb pdb (www.rcsb.org)
5NJ9A 5NJAA 5NJBA 5NJ5A
similar chains in the KnotProt database (40% sequence similarity)
5NJ9C 5NJCA 5NJCC 5NJAC 5NJFA 5NJFC 5NJBC 5NJ5C
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5NJ9 A;  5NJA A;  5NJB A;  5NJ5 A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5NJ9 C;  5NJC A;  5NJC C;  5NJA C;  5NJF A;  5NJF C;  5NJB C;  5NJ5 C; 
           

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