5OOMS

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rrna
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 193-255 63 1-192, 256-390 192 135 knot
Chain Sequence
VARYPPIVASMTADSKAARLRRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLP--------------------AALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 52-358 307 1-51, 359-370 51 12 knot
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3.1m 167-238 72 1-150, 263-370 151-166, 239-262 150 108 slipknot
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3.1m 169-238 70 1-166, 263-370 167-168, 239-262 166 108 slipknot
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3.1m 169-262 94 1-151, 265-370 152-168, 263-264 151 106 slipknot
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2.1m 169-264 96 1-151, 280-370 152-168, 265-279 151 91 slipknot
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3.1m 170-334 165 335-370 1-151 152-169 151 35 slipknot
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2.1m 171-263 93 1-168, 277-370 169-170, 264-276 168 94 slipknot
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3.1m 169-297 129 1-152, 311-370 153-168, 298-310 152 60 slipknot
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3.1m 171-334 164 335-370 1-169 170-170 169 35 slipknot
sequence length 390
structure length 370
publication title Structures of the human mitochondrial ribosome in native states of assembly
doi rcsb
molecule tags Ribosome
molecule keywords 16S ribosomal RNA
missing residues 80-99
ec nomenclature
pdb deposition date 2017-08-08
KnotProt deposition date 2017-09-13
Image from the rcsb pdb (www.rcsb.org)
5OOMs 4V1Aw 3J7Ys
similar chains in the KnotProt database (40% sequence similarity)
5OOLs 5AJ4Bw 3J9Ms
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5OOM s;  4V1A w;  3J7Y s; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5OOL s;  5AJ4 Bw;  3J9M s; 
           

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