5TWKA

Crystal structure of rlmh in complex with sinefungin
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 73-121 49 1-72, 122-157 72 36 knot
Chain Sequence
HHVKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 72-123 52 1-71, 124-157 71 34 knot
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2.1 70-119 50 1-69 125-157 120-124 69 33 slipknot
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3.1 73-123 51 124-157 1-71 72-72 71 33 slipknot
publication title Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine.
pubmed doi rcsb
structure length 157
molecule tags Transferase/antibiotic
source organism Escherichia coli
sequence length 157
molecule keywords Ribosomal RNA large subunit methyltransferase H
ec nomenclature
pdb deposition date 2016-11-14
KnotProt deposition date 2017-05-03
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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