5VIKA

Crystal structure of monomeric near-infrared fluorescent protein mirfp703
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 12-250 239 1-11, 251-296 11 46 knot
Chain Sequence
NCEHEEIHLAGSIQPHGALLVVSEHDHRVIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYCGLMHRPPEGGLIIELERAGPSIDLSGTLAPALERIRTAGSLRALCDDTVLLFQQCTGYDRVMVYRFDEQGHGLVFSECHVPGLESYFGNRYPSSLVPQMARQLYVRQRVRVLVDVTYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQFLKDMGVRATLAVSLVVGGKLWGLVVCHHYLPRFIRFELRAICKRLAERIATRITALE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 9-291 283 1-8, 292-296 8 5 knot
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4.1 8-252 245 1-7 258-296 253-257 7 39 slipknot
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3.2m 11-255 245 1-10 267-296 256-266 10 30 slipknot
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3.2m 12-269 258 1-11 284-296 270-283 11 13 slipknot
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3.2m 10-284 275 1-9 292-296 285-291 9 5 slipknot
view details
3.2m 11-285 275 1-8, 296-296 9-10, 286-295 8 1 slipknot
publication title Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies.
doi rcsb
structure length 296
molecule tags Fluorescent protein
source organism Rhodopseudomonas palustris
sequence length 296
molecule keywords near-infrared fluorescent protein miRFP703
ec nomenclature
pdb deposition date 2017-04-17
KnotProt deposition date 2017-06-08
Image from the rcsb pdb (www.rcsb.org)
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