5W23A

Crystal structure of rsv f in complex with 5c4 fab
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
+31 31-264 234 1-30 271-484 265-270 30 214 slipknot
Chain Sequence
NITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ--------------------------------------FLGFLLGVGSAIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSD
sequence length 484
structure length 446
publication title Structural Basis of Respiratory Syncytial Virus Subtype-Dependent Neutralization by an Antibody Targeting the Fusion Glycoprotein
rcsb
molecule tags Viral protein/immune system
molecule keywords Fusion glycoprotein F0
source organism Human respiratory syncytial virus a
missing residues 73-110
ec nomenclature
pdb deposition date2017-06-05
KnotProt deposition date2017-12-06
Image from the rcsb pdb (www.rcsb.org)
5K6BF 5W23A 5K6CF 4ZYPA 4CCFA 6APBA 3RKIA
similar chains in the KnotProt database (40% sequence similarity)
5EA4F 5C69A 5C6BF 5WB0F 5KWWF 5EA8F 5K6FF 5TDGA 5TDGB 5TDGC 5EA3F 4CCFB 4CCFC 4CCFD 4CCFE 4CCFF 5EA6F 5K6HF 5EA7F 5UDEF 5U68A 5U68B 5U68C 5K6IF 5TOJA 5TOJB 5TOJC 5UDCA 5UDCD 5UDCF 5K6GF 5EA5F 6APBB 6APBC 5W23B 5W23C 5TPNA 3RKIB 3RKIC 4JHWF 6APDA 6APDB 6APDC 5TDLA 5TOKA 5TOKB 5TOKC 5UDDA 5UDDB 5UDDC 5UDDD 5UDDE 5UDDF 5UDDG 5UDDH 5UDDI 4ZYPB 4ZYPC
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5K6B F;  5W23 A;  5K6C F;  4ZYP A; 
               
               
#similar chains, but unknotted
 4CCF A;  6APB A;  3RKI A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5EA4 F;  5C69 A;  5C6B F;  5WB0 F;  5KWW F;  5EA8 F;  5K6F F;  5TDG A;  5TDG B;  5TDG C;  5EA3 F;  4CCF B;  4CCF C;  4CCF D;  4CCF E;  4CCF F;  5EA6 F;  5K6H F;  5EA7 F;  5UDE F;  5U68 A;  5U68 B;  5U68 C;  5K6I F;  5TOJ A;  5TOJ B;  5TOJ C;  5UDC A;  5UDC D;  5UDC F;  5K6G F;  5EA5 F;  6APB B;  6APB C;  5W23 B;  5W23 C;  5TPN A;  3RKI B;  3RKI C;  4JHW F;  6APD A;  6APD B;  6APD C;  5TDL A;  5TOK A;  5TOK B;  5TOK C;  5UDD A;  5UDD B;  5UDD C;  5UDD D;  5UDD E;  5UDD F;  5UDD G;  5UDD H;  5UDD I;  4ZYP B;  4ZYP C; 
           

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