5WYRA

Crystal structure and catalytic mechanism of the essential m1g37 trna methyltransferase trmd from pseudomonas aeruginosa
Knot K +31
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
+31 90-133 44 1-89, 134-248 89 115 knot
Chain Sequence
SMLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRVYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGALG------EDSFTDGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRD
sequence length 248
structure length 242
publication title Crystal Structure and catalytic mechanism of TrmD from Pseudomonas aeruginosa, a m1G37 tRNA methyltransferase essential for bacterial survival
rcsb
molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
source organism Pseudomonas aeruginosa (strain ucbpp-pa14)
missing residues 165-170
ec nomenclature
pdb deposition date2017-01-15
KnotProt deposition date2017-12-20
Image from the rcsb pdb (www.rcsb.org)
4YQDA 4YVGA 4YQTA 4MCDA 4YVHA 4YQRA 3QUVA 1UALA 4YQSA 4YPXA 1UAJA 4MCBA 4MCCA 1UAKA 4H3ZA 3AXZA 5WYQA 4IG6A 3KNUA 1UAMA 4H3YA 5WYRA 3KY7A 3IEFA 1P9PA 4YVJA 4YVKA 4YVIA
similar chains in the KnotProt database (40% sequence similarity)
4YQAA 4YQ9A 3QUVB 4YQOA 4YQ5A 4YQ0A 4YQQA 4YQKA 4YQ7A 4YPZA 4YQCA 4YQGA 4YPYA 4YQ4A 4YQJA 4YQIA 4YQ8A 4YQ6A 4MCBB 5D9FA 4MCCB 4YQ1A 4YQBA 4H3ZB 4YQNA 5WYQB 3KNUB 3KNUC 3KNUD 4YPWA 4YQ3A 4YQLA 4H3YB 5WYRB 4YQPA 3IEFB 4YQ2A 4YVJB 4YVKB 4YVIB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 4YQD A;  4YVG A;  4YQT A;  4MCD A;  4YVH A;  4YQR A;  3QUV A;  1UAL A;  4YQS A;  4YPX A;  1UAJ A;  4MCB A;  4MCC A;  1UAK A;  4H3Z A;  3AXZ A;  5WYQ A;  4IG6 A;  3KNU A;  1UAM A;  4H3Y A;  5WYR A;  3KY7 A;  3IEF A;  1P9P A;  4YVJ A;  4YVK A;  4YVI A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 4YQA A;  4YQ9 A;  3QUV B;  4YQO A;  4YQ5 A;  4YQ0 A;  4YQQ A;  4YQK A;  4YQ7 A;  4YPZ A;  4YQC A;  4YQG A;  4YPY A;  4YQ4 A;  4YQJ A;  4YQI A;  4YQ8 A;  4YQ6 A;  4MCB B;  5D9F A;  4MCC B;  4YQ1 A;  4YQB A;  4H3Z B;  4YQN A;  5WYQ B;  3KNU B;  3KNU C;  3KNU D;  4YPW A;  4YQ3 A;  4YQL A;  4H3Y B;  5WYR B;  4YQP A;  3IEF B;  4YQ2 A;  4YVJ B;  4YVK B;  4YVI B; 
           

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