6B1VA

Crystal structure of ps i-cgsb c78s in complex with i-neocarratetraose
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 6-264 259 1-5 294-452 265-293 5 159 slipknot
Chain Sequence
QKPNIILIVADDLGYADVGFNGSKDIITPNIDDLAKSGTSFSDAYVAHPFSGPSRAALMTGRYPHKIGSQFNLPTRGSNVGVPTDAKFISKLLNENNYFTGALGKWHMGDTPQHHPNKRGFDEYYGFLGGGHNYFPDQYQPQYKKQKAQGLKNIFEYITPLEHNGKEVKETQYITDALSREAVNFVDKAVNKKHPFFLYLAYNAPHTPLQAKDEDMAMFPNIKNKDRKTYAGMVYAVDRGVGKLVEALKKNNQYDNTLIVFMSDNGGKLSKGANNFPLKAGKGSTQEGGFRVPMLFHWPKHVPAGKRFSHPVSALDLYPTFAALAGAKVEENQHLDGTNMWPAFIKNENPHKDEPIYALRHRKGYSDAAIRMNQWKALKVNQQPWQLFNIENDISEKHDVSKSNKALLTDMVREMEKWSWDNQQPSWFHETTEGVNWRLDAMPRFDKTFKTT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 6-262 257 1-5 267-452 263-266 5 186 slipknot
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3.1 5-272 268 1-4 288-452 273-287 4 165 slipknot
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2.1 8-286 279 1-7 291-452 287-290 7 162 slipknot
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3.1 9-280 272 1-4, 288-452 5-8, 281-287 4 165 slipknot
view details
2.1 9-287 279 1-7, 290-452 8-8, 288-289 7 163 slipknot
sequence length 452
structure length 452
publication title The molecular basis of polysaccharide sulfatase activity and a nomenclature for active site sub-sites in this class of enzyme
rcsb
molecule tags Hydrolase
molecule keywords Iota-carrageenan sulfatase
source organism Pseudoalteromonas
total genus Genus: 160
ec nomenclature
pdb deposition date 2017-09-19
KnotProt deposition date 2018-03-15
Image from the rcsb pdb (www.rcsb.org)
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