Found 49 chains in Knotoided chains table. Displaying 1 - 49. Applied filters: Probabilistic

Search results query: topological notation for knotoids: S 4.1, 3.2, 2.1, 1.1

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#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6nph|A|2019-09-08|S|4.1 3.2 2.1 1.1;
  6npk|A|2019-09-07|S|4.1 3.2 2.1 1.1;
  6dzz|A|2019-05-10|S|4.1 3.2 2.1 1.1;
  6dzv|A|2019-05-10|S|4.1 3.2 2.1 1.1;
  6dzy|A|2019-05-09|S|4.1 3.2 2.1 1.1;
  6dzw|A|2019-05-09|S|4.1 3.2 2.1 1.1;
  5j4n|A|2018-06-12|S|4.1 3.2 2.1 1.1;
  4fxz|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  2x79|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  2xq2|B|2018-06-11|S|4.1 3.2 2.1 1.1;
  3ob6|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4hmk|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4us3|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3qs6|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xnu|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xnx|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xp1|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xp6|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xp9|C|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xpa|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xpf|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  2a65|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xpg|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4xph|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3f3a|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3f4i|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3gi8|C|2018-06-11|S|4.1 3.2 2.1 1.1;
  3gi9|C|2018-06-11|S|4.1 3.2 2.1 1.1;
  3gwu|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3gwv|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3tt1|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3usg|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3usj|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3usk|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mm6|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mm7|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3usm|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mm9|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mma|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mmb|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mmd|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4mmf|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  6awn|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  6awp|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  6awq|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  3lrb|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  2q6h|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  2q72|A|2018-06-11|S|4.1 3.2 2.1 1.1;
  4d1c|A|2018-06-11|S|4.1 3.2 2.1 1.1;
Knotoid types pdb Title
S 4.1, 3.2, 2.1, 1.1 6nphA Structure of nkcc1 tm domain
S 4.1, 3.2, 2.1, 1.1 6npkA Structure of the tm domain
S 4.1, 3.2, 2.1, 1.1 6dzzA Cryo-em structure of the wild-type human serotonin transporter in complex with ibogaine and 15b8 fab in the inward conformation
S 4.1, 3.2, 2.1, 1.1 6dzvA Wild type human serotonin transporter in complex with 15b8 fab bound to ibogaine in occluded conformation
S 4.1, 3.2, 2.1, 1.1 6dzyA Cryo-em structure of the ts2-active human serotonin transporter in complex with 15b8 fab and 8b6 scfv bound to ibogaine
S 4.1, 3.2, 2.1, 1.1 6dzwA Cryo-em structure of the ts2-inactive human serotonin transporter in complex with paroxetine and 15b8 fab and 8b6 scfv
S 4.1, 3.2, 2.1, 1.1 5j4nA Crystal structure of the l-arginine/agmatine antiporter adic in complex with agmatine at 2.6 angstroem resolution
S 4.1, 3.2, 2.1, 1.1
22
4fxzA Crystal structure of leut-f253a bound to l-leucine from lipid bicelles
S 4.1, 3.2, 2.1, 1.1 2x79A Inward facing conformation of mhp1
S 4.1, 3.2, 2.1, 1.1
20
2xq2B Structure of the k294a mutant of vsglt
S 4.1, 3.2, 2.1, 1.1
1
3ob6A Structure of adic(n101a) in the open-to-out arg+ bound conformation
S 4.1, 3.2, 2.1, 1.1
15
4hmkA Crystal structure of leut-e290s with bound br
S 4.1, 3.2, 2.1, 1.1 4us3A Crystal structure of the bacterial nss member mhst in an occluded inward-facing state
S 4.1, 3.2, 2.1, 1.1
15
3qs6A Crystal structure of leut mutant f259v,i359q bound to sodium and l-tryptophan
S 4.1, 3.2, 2.1, 1.1 4xnuA X-ray structure of drosophila dopamine transporter in complex with nisoxetine
S 4.1, 3.2, 2.1, 1.1 4xnxA X-ray structure of drosophila dopamine transporter in complex with reboxetine
S 4.1, 3.2, 2.1, 1.1 4xp1A X-ray structure of drosophila dopamine transporter bound to neurotransmitter dopamine
S 4.1, 3.2, 2.1, 1.1 4xp6A X-ray structure of drosophila dopamine transporter bound to psychostimulant methamphetamine
S 4.1, 3.2, 2.1, 1.1 4xp9C X-ray structure of drosophila dopamine transporter bound to psychostimulant d-amphetamine
S 4.1, 3.2, 2.1, 1.1 4xpaA X-ray structure of drosophila dopamine transporter bound to 3,4dichlorophenethylamine
S 4.1, 3.2, 2.1, 1.1 4xpfA X-ray structure of drosophila dopamine transporter with subsiteb mutations (d121g/s426m) bound to rti-55
S 4.1, 3.2, 2.1, 1.1
16
2a65A Crystal structure of leutaa, a bacterial homolog of na+/cl--dependent neurotransmitter transporters
S 4.1, 3.2, 2.1, 1.1 4xpgA X-ray structure of drosophila dopamine transporter with subsiteb mutations (d121g/s426m) bound to beta-cft or win35428
S 4.1, 3.2, 2.1, 1.1 4xphA X-ray structure of drosophila dopamine transporter with subsiteb mutations (d121g/s426m) bound to 3,4dichlorophenethylamine
S 4.1, 3.2, 2.1, 1.1
13
3f3aA Crystal structure of leut bound to l-tryptophan and sodium
S 4.1, 3.2, 2.1, 1.1
17
3f4iA Crystal structure of leut bound to l-selenomethionine and sodium
S 4.1, 3.2, 2.1, 1.1 3gi8C Crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment
S 4.1, 3.2, 2.1, 1.1
18
3gi9C Crystal structure of apct transporter bound to 7f11 monoclonal fab fragment
S 4.1, 3.2, 2.1, 1.1
16
3gwuA Leucine transporter leut in complex with sertraline
S 4.1, 3.2, 2.1, 1.1
18
3gwvA Leucine transporter leut in complex with r-fluoxetine
S 4.1, 3.2, 2.1, 1.1
24
3tt1A Crystal structure of leut in the outward-open conformation in complex with fab
S 4.1, 3.2, 2.1, 1.1
15
3usgA Crystal structure of leut bound to l-leucine in space group c2 from lipid bicelles
S 4.1, 3.2, 2.1, 1.1
13
3usjA Crystal structure of leut bound to l-leucine in space group p21 from lipid bicelles
S 4.1, 3.2, 2.1, 1.1
16
3uskA Crystal structure of leut bound to l-leucine in space group p21 from lipid bicelles
S 4.1, 3.2, 2.1, 1.1
14
4mm6A Crystal structure of leubat (delta13 mutant) in complex with (s)-duloxetine
S 4.1, 3.2, 2.1, 1.1
13
4mm7A Crystal structure of leubat (delta13 mutant) in complex with desvenlafaxine
S 4.1, 3.2, 2.1, 1.1
16
3usmA Crystal structure of leut bound to l-selenomethionine in space group c2 from lipid bicelles (collected at 1.2 a)
S 4.1, 3.2, 2.1, 1.1
19
4mm9A Crystal structure of leubat (delta13 mutant) in complex with fluvoxamine
S 4.1, 3.2, 2.1, 1.1
14
4mmaA Crystal structure of leubat (delta13 mutant) in complex with clomipramine
S 4.1, 3.2, 2.1, 1.1
20
4mmbA Crystal structure of leubat (delta6 mutant) in complex with sertraline
S 4.1, 3.2, 2.1, 1.1
13
4mmdA Crystal structure of leubat (delta6 mutant) in complex with (s)-duloxetine
S 4.1, 3.2, 2.1, 1.1
16
4mmfA Crystal structure of leubat (delta5 mutant) in complex with mazindol
S 4.1, 3.2, 2.1, 1.1 6awnA X-ray structure of the s439t human serotonin transporter complexed with paroxetine at the central site
S 4.1, 3.2, 2.1, 1.1 6awpA X-ray structure of the ts3 human serotonin transporter complexed with fluvoxamine at the central site
S 4.1, 3.2, 2.1, 1.1 6awqA Anomalous chloride signal reveals the position of sertraline complexed with the serotonin transporter at the central site
S 4.1, 3.2, 2.1, 1.1
2
3lrbA Structure of e. coli adic
S 4.1, 3.2, 2.1, 1.1
17
2q6hA Crystal structure analysis of leut complexed with l-leucine, sodium, and clomipramine
S 4.1, 3.2, 2.1, 1.1
16
2q72A Crystal structure analysis of leut complexed with l-leucine, sodium, and imipramine
S 4.1, 3.2, 2.1, 1.1 4d1cA Structure of mhp1, a nucleobase-cation-symport-1 family transporter, in a closed conformation with bromovinylhydantoin bound.
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling