Found 189 chains in Knotted chains table. Displaying 151 - 189. Applied filters: Probabilistic

List of protein chains where "artifacts" knots or slipknots are identified.

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#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6kw3|I|2019-11-20|S|+3.1;
  6kw4|I|2019-11-20|S|+3.1;
  6k15|I|2019-11-20|S|+3.1 +3.1;
  6sgb|DH|2019-10-16|K|-3.1;
  6sgb|UY|2019-10-16|K|-3.1 4.1 4.1 4.1;
  6sgb|F5|2019-10-16|S|+3.1;
  6s4q|A|2019-10-16|K|-3.1;
  6sga|UY|2019-10-16|K|-3.1 4.1 4.1 4.1;
  6sg9|DH|2019-10-16|K|-3.1;
  6i2x|B|2019-09-21|S|+3.1;
  6nbq|F|2019-09-02|K|+3.1;
  6rao|I|2019-08-30|K|-3.1;
  6a9s|A|2019-06-20|S|+3.1;
  5mqn|A|2018-10-21|K|-3.1;
  6g7e|B|2018-10-21|S|-3.1;
  6fwu|A|2018-10-13|S|-3.1;
  6f38|M|2018-10-04|S|-3.1 -5.2 -3.1 7.3 7.2;
  5afu|M|2018-10-03|S|-3.1 -5.1;
  6f1t|N|2018-10-01|S|-5.2 -3.1 -3.1 -3.1;
  6f1y|f|2018-10-01|K|4.1;
  5zep|0|2018-09-28|K|8.2 +3.1 +3.1;
  4v4p|AM|2018-09-28|K|+3.1;
  5gxj|A|2018-09-22|S|4.1;
  5h7i|C|2018-09-16|S|-3.1;
  5if3|A|2018-09-16|K|+3.1;
  5aft|M|2018-09-15|S|-5.1 -3.1;
  6f1t|M|2018-09-15|S|-5.1 -3.1;
  5adx|M|2018-09-14|S|-3.1+5.1;
  5nw4|a|2018-09-14|S|-5.1 -3.1;
  6f3a|N|2018-09-14|S|-5.2 -3.1 -3.1;
  5adx|N|2018-09-14|S|-8.2 -5.2 -3.1 -3.1 -3.1;
  6f3a|M|2018-09-14|S|-5.1 -3.1 -3.1;
  5afu|N|2018-09-14|S|-8.2 -5.2 -3.1 -3.1 -3.1;
  1gjj|A|2018-09-14|S|7.4 5.1 +3.1;
  5nw4|b|2018-09-14|S|-8.2 -5.2 -3.1 -3.1 -3.1;
  6f38|N|2018-09-14|S|-8.20 -5.1 -3.1 -3.1 -3.1;
  5xq0|A|2018-09-13|S|-3.1;
  6ee5|A|2018-09-13|K|+3.1;
  5xq1|A|2018-09-13|S|4.1 4.1;
  5wwn|A|2018-09-13|K|-3.1 -3.1 -3.1 -3.1 -3.1 -3.1 -3.1 -3.1 -3.1 -3.1 -3.1;
  5uno|A|2018-09-13|S|+3.1;
  5x2p|A|2018-09-13|S|+3.1 +3.1;
  5z79|A|2018-09-13|K|-6.1 -3.1 -3.1 -3.1;
  5x2p|B|2018-09-13|S|-3.1 +3.1 -3.1 +3.1;
  5x2n|B|2018-09-13|S|+3.1 +3.1;
  5ugq|A|2018-09-13|S|+3.1;
  5uxz|A|2018-09-13|S|+3.1;
  4bpq|A|2018-09-13|S|-3.1 -5.2 -7.5 -5.1;
  3cmi|A|2018-09-12|K|+3.1;
  2bm0|A|2018-09-12|K|4.1;
  5l25|A|2018-09-12|K|0.1;
  5iw7|A|2018-09-12|S|4.1;
  5ayl|A|2018-09-12|S|+3.1 +3.1 +3.1;
  3qfh|D|2018-09-12|K|+3.1;
  4p0o|A|2018-09-12|S|4.1 -3.1 -3.1 -3.1 -3.1;
  2fy5|A|2018-09-12|K|-3.1 -3.1 -3.1;
  4ye9|A|2018-09-12|K|-3.1;
  3zxx|A|2018-09-12|K|+3.1;
  2cau|A|2018-09-12|K|-5.2;
  1gku|B|2018-09-12|K|+3.1;
  5ei0|A|2018-09-12|S|-3.1 -3.1 -3.1 -3.1;
  3psp|A|2018-09-12|K|+3.1;
  4fvm|A|2018-09-12|S|4.1;
  4o6c|A|2018-09-12|S|+3.1 +3.1;
  2cav|A|2018-09-12|K|-5.2 3.1;
  2r6e|A|2018-09-12|K|+3.1;
  3gh2|X|2018-09-12|K|+3.1;
  2vdx|A|2018-09-12|S|4.1 -3.1 -3.1 -3.1 -3.1;
  3vvj|A|2018-09-12|S|4.1 -3.1 -3.1 4.1 -3.1 -3.1;
  5gu7|C|2018-09-12|S|+3.1 +3.1;
  5gu6|A|2018-09-12|S|+3.1 +3.1;
  4xe2|A|2018-09-12|S|+3.1;
  5y3m|A|2018-04-18|K|+3.1;
  6crz|A|2018-04-12|S|+3.1 +3.1 +3.1 +3.1;
  5u8r|A|2018-03-03|S|-3.1 -3.1 -3.1 -3.1 -3.1;
  5u8r|A|2018-03-03|S|-3.1 -3.1 -3.1 -3.1 -3.1;
  5u8r|A|2018-02-28|S|-3.1;
  5u8r|A|2018-02-28|S|-3.1;
  5vi9|A|2018-01-31|K|4.1;
  6c3p|E|2018-01-25|K|-3.1;
  6f3a|Y|2018-01-22|S|-3.1;
  6f3a|Y|2018-01-22|S|-3.1;
  6f3a|Y|2018-01-19|S|-3.1;
  6f3a|Y|2018-01-19|S|-3.1;
  6f38|Y|2018-01-18|K|-3.1;
  6f1y|0|2018-01-18|K|4.1;
  5vhi|E|2017-08-27|K|+3.1;
  5vhs|E|2017-08-27|K|3.1;
  5tj6|A|2017-01-10|K|-3.1;
  5bt1|A|2016-10-26|S|-3.1;
  5gm6|Q|2016-10-05|K|-3.1;
  5l9u|A|2016-09-19|K|+3.1;
  5gmk|Q|2016-08-19|K|-3.1;
  5jpq|R|2016-07-30|S|4.1;
  5l3p|z|2016-07-21|K|-3.1;
  5ezt|X|2016-07-20|K|+3.1;
  5ikj|A|2016-04-23|K|4.1;
  5gao|E|2016-02-02|K|+3.1;
  5adx|Y|2015-12-31|K|3.1 8.2;
  5aor|A|2015-11-19|K|-3.1;
  4wzs|C|2015-08-26|K|+3.1;
  4yk8|B|2015-06-03|S|+3.1;
  3wpc|A|2015-02-11|K|+3.1;
  3wpg|A|2015-02-11|K|+3.1;
  3wph|A|2015-02-11|K|+3.1;
  3wpi|A|2015-02-11|K|+3.1;
  1s1h|I|2014-10-08|K|+3.1;
  2ybb|n|2014-10-08|K|+3.1;
  4ce4|z|2014-10-08|K|4.1 +6.2 +3.1 4.1;
  1ml5|m|2014-10-08|K|+3.1;
  1u8c|A|2014-10-07|S|+3.1;
  1vw1|A|2014-10-07|K|+3.1;
  1jv2|A|2014-10-06|S|+3.1;
  1l5g|A|2014-10-06|S|+3.1;
  4ux8|C|2014-10-04|K|+3.1;
  3fcs|A|2014-10-01|S|+3.1;
  4nm3|A|2014-09-30|K|+3.1;
  3oc3|A|2014-09-29|K|+3.1;
  3prx|A|2014-09-27|S|+3.1;
  1fe1|G|2014-09-25|S|+3.1;
  1ta2|A|2014-09-23|S|+3.1;
  4mmz|A|2014-09-23|K|+3.1;
  3m9s|M|2014-09-23|K|+3.1;
  3m9c|M|2014-09-23|K|+3.1;
  3c1k|A|2014-09-23|S|+3.1;
  2w4v|C|2014-09-23|S|+3.1 4.1;
  2rdo|7|2014-09-23|K|4.1;
  2odr|D|2014-09-23|S|+3.1 +3.1;
  2nmv|A|2014-09-23|K|4.1;
  2bdy|A|2014-09-23|S|+3.1;
  1zrb|A|2014-09-23|S|+3.1;
  1zgv|A|2014-09-23|S|+3.1;
  1zgi|A|2014-09-23|S|+3.1;
  1z71|A|2014-09-23|S|+3.1;
  1xm1|A|2014-09-23|S|+3.1;
  1w5c|X|2014-09-23|K|+3.1;
  1ta6|A|2014-09-23|S|+3.1;
  1t0j|B|2014-09-23|K|+3.1;
  1sl3|A|2014-09-23|S|+3.1;
  1nt1|A|2014-09-23|S|+3.1;
  1nm6|A|2014-09-23|S|+3.1;
  1ilx|G|2014-09-23|S|+3.1;
  1g37|A|2014-09-23|S|+3.1;
  1fka|C|2014-09-23|S|4.1;
  1eol|A|2014-09-23|S|+3.1;
  1eoj|A|2014-09-23|S|+3.1;
  1d9i|A|2014-09-23|S|+3.1;
  1d6w|A|2014-09-23|S|+3.1;
  2w4w|C|2014-09-23|K|+3.1;
  4mmy|A|2014-09-18|K|+3.1;
  3pvm|B|2014-09-03|K|+3.1;
  4jhw|F|2014-08-31|S|+3.1;
  4g1e|A|2014-08-23|K|+3.1 +3.1 4.1 +3.1 +3.1;
  3ije|A|2014-08-22|K|+3.1;
  4mmx|A|2014-08-22|S|+3.1;
  2pps|F|2014-08-20|K|+3.1;
  2w6e|G|2014-08-19|K|+3.1;
  2w6f|G|2014-08-19|K|+3.1;
  1w0k|G|2014-08-19|K|+3.1;
  1qo1|G|2014-08-19|K|+3.1;
  1nbm|G|2014-08-19|K|+3.1;
  1efr|G|2014-08-19|K|+3.1;
  1e1r|G|2014-08-19|K|+3.1;
  1cow|G|2014-08-19|K|+3.1;
  1bmf|G|2014-08-19|K|+3.1;
  1yl3|M|2014-08-19|K|+3.1;
  1giy|M|2014-08-19|K|+3.1;
  3e8d|A|2014-08-19|K|4.1 4.1;
  2xh5|A|2014-08-19|K|4.1 4.1;
  2x39|A|2014-08-19|K|4.1 4.1;
  2uw9|A|2014-08-19|K|4.1 4.1;
  2jdr|A|2014-08-19|K|4.1 4.1;
  1acb|E|2014-08-18|S|+3.1;
  4p26|D|2014-08-13|S|+3.1;
  4cru|A|2014-08-13|K|+3.1;
  4m1c|B|2014-08-10|S|+3.1 +3.1;
  4av2|A|2014-08-01|S|+3.1;
  1he8|A|2014-07-31|K|+3.1;
  1m1x|A|2014-07-31|K|+3.1;
  1mqs|A|2014-07-31|S|+3.1;
  1o6l|A|2014-07-31|K|4.1;
  1t0h|B|2014-07-31|K|+3.1;
  1yc0|A|2014-07-31|K|-5.2 -3.1;
  2d7d|A|2014-07-31|K|4.1;
  3e0j|A|2014-07-31|K|+3.1;
  3gbn|L|2014-07-31|K|+3.1;
  3iyk|A|2014-07-31|K|+3.1;
  4g1m|A|2014-07-31|K|4.1 +3.1;
  1eku|A|2014-07-31|K|+3.1;
Knot types Knot loop types pdb Title
S +31
1
4mmxA Integrin alphavbeta3 ectodomain bound to the tenth domain of fibronectin
K +31 2ppsF Photosynthetic reaction center and core antenna system (trimeric), alpha carbon only
K +31
1
2w6eG Low resolution structures of bovine mitochondrial f1-atpase during controlled dehydration: hydration state 1.
K +31
1
2w6fG Low resolution structures of bovine mitochondrial f1-atpase during controlled dehydration: hydration state 2.
K +31
1
1w0kG Beryllium fluoride inhibited bovine f1-atpase
K +31
1
1qo1G Molecular architecture of the rotary motor in atp synthase from yeast mitochondria
K +31
1
1nbmG The structure of bovine f1-atpase covalently inhibited with 4-chloro-7-nitrobenzofurazan
K +31
1
1efrG Bovine mitochondrial f1-atpase complexed with the peptide antibiotic efrapeptin
K +31
1
1e1rG Bovine mitochondrial f1-atpase inhibited by mg2+adp and aluminium fluoride
K +31
1
1cowG Bovine mitochondrial f1-atpase complexed with aurovertin b
K +31
1
1bmfG Bovine mitochondrial f1-atpase
K +31
1
1yl3M Crystal structure of 70s ribosome with thrs operator and trnas. large subunit. the coordinates for the small subunit are in the pdb entry 1yl4.
K +31
1
1giyM Crystal structure of the ribosome at 5.5 a resolution. this file, 1giy, contains the 50s ribosome subunit. the 30s ribosome subunit, three trna, and mrna molecules are in the file 1gix
K 41 41
1
3e8dA Crystal structures of the kinase domain of akt2 in complex with atp-competitive inhibitors
K 41 41
1
2xh5A Structure of 4-(4-tert-butylbenzyl)-1-(7h-pyrrolo(2,3-d) pyrimidin-4-yl)piperidin-4-amine bound to pkb
K 41 41
1
2x39A Structure of 4-amino-n-(4-chlorobenzyl)-1-(7h-pyrrolo(2,3-d) pyrimidin-4-yl)piperidine-4-carboxamide bound to pkb
K 41 41
1
2uw9A Structure of pkb-beta (akt2) complexed with 4-(4-chloro-phenyl)-4-(4-(1h-pyrazol-4-yl)-phenyl)-piperidine
K 41 41
1
2jdrA Structure of pkb-beta (akt2) complexed with the inhibitor a-443654
S +31
1
1acbE Crystal and molecular structure of the bovine alpha-chymotrypsin-eglin c complex at 2.0 angstroms resolution
S +31
1
4p26D Structure of the p domain from a gi.7 norovirus variant in complex with a-type 2 hbga
K +31
1
4cruA Complex of human cnot9 and cnot1 including one tryptophan
S +31 +31
1
4m1cB Crystal structure analysis of fab-bound human insulin degrading enzyme (ide) in complex with amyloid-beta (1-40)
S +31
1
4av2A Single particle electron microscopy of pilq dodecameric complexes from neisseria meningitidis.
K +31
1
1he8A Ras g12v - pi 3-kinase gamma complex
K +31
1
1m1xA Crystal structure of the extracellular segment of integrin alpha vbeta3 bound to mn2+
S +31
1
1mqsA Crystal structure of sly1p in complex with an n-terminal peptide of sed5p
K 41
1
1o6lA Crystal structure of an activated akt/protein kinase b (pkb-pif chimera) ternary complex with amp-pnp and gsk3 peptide
K +31
1
1t0hB Crystal structure of the rattus norvegicus voltage gated calcium channel beta subunit isoform 2a
K -52 -31
2
1yc0A Short form hgfa with first kunitz domain from hai-1
K 41
1
2d7dA Structural insights into the cryptic dna dependent atp-ase activity of uvrb
K +31
1
3e0jA X-ray structure of the complex of regulatory subunits of human dna polymerase delta
K +31
1
3gbnL Crystal structure of fab cr6261 in complex with the 1918 h1n1 influenza virus hemagglutinin
K +31
1
3iykA Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
K 41 +31
2
4g1mA Re-refinement of alpha v beta 3 structure
K +31
1
1ekuA Crystal structure of a biologically active single chain mutant of human ifn-gamma
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling