3V5AA

Crystal structure of c-lobe of bovine lactoferrin complexed with gamma amino butyric acid at 1.44 a resolution
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 4x +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 17-171 155 1-16, 172-238 16 66 slipknot
Fingerprint Knot forming loop Loop type
K +31 Asp395 ... Cys481 <-> Cys675 ... Tyr526 <->
Bridging ionFe694
<-> Asp395
ion-based
K +31 Asp395 ... Cys481 <-> Cys675 ... Cys587 <-> Cys573 ... Tyr526 <->
Bridging ionFe694
<-> Asp395
ion-based
K +31 Asp395 ... Cys481 <-> Cys675 ... Cys630 <-> Cys625 ... Tyr526 <->
Bridging ionFe694
<-> Asp395
ion-based
K +31 Asp395 ... Cys481 <-> Cys675 ... Cys630 <-> Cys625 ... Cys587 <-> Cys573 ... Tyr526 <->
Bridging ionFe694
<-> Asp395
ion-based
Chain Sequence
YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
sequence length 335
structure length 335
publication title Crystal Structure of C-lobe of Bovine Lactoferrin Complexed with Gamma Amino Butyric Acid at 1.44 A Resolution
rcsb
molecule tags Metal binding protein
molecule keywords Lactotransferrin
total genus Genus: 118
ec nomenclature ec 3.4.21.-:
pdb deposition date 2011-12-16
KnotProt deposition date 2018-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00405 Transferrin Transferrin
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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