KnotProt 2.0
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Introduction
Knot detection
Knotoids
Knots based on dissulfide and ion bonds
Cysteine knots
How to
Search and browse database
Analyze single structure and trajectory
Interpret knotting data
Apply results of fingerprint analysis
Prepare files to submit data
About
List of cysteine knots (non-redundant)
List of cysteine knots (all)
Database statistics
API
Server status
KnotProt references
Contact
When you publish results using the database, please cite the following papers:
Dabrowski-Tumanski P, Rubach P, Goundaroulis D, Dorier J, Sułkowski P, Millett KC, Rawdon EJ, Stasiak A, Sulkowska JI, (2018)
KnotProt 2.0: a database of proteins with knots and other entangled structures
, Nucleic Acids Research, gky1140, https://doi.org/10.1093/nar/gky1140
Jamroz M, Niemyska W, Rawdon EJ, Stasiak A, Millett KC, Sułkowski P, Sulkowska JI (2014)
KnotProt: a database of proteins with knots and slipknots
, Nucleic Acids Research, 43, D306-D314DOI: 10.1093/nar/gku1059
Sulkowska JI, Rawdon EJ, Millett KC, Onuchic JN and Stasiak A (2012)
Conservation of complex knotting and slipknotting patterns in proteins
, Proc. Natl. Acad. Sci. U.S.A. 109, E1715–E1723, DOI: 10.1073/pnas.1205918109
When you publish results concerning knotoids, please cite the original method:
Dorier J, Goundaroulis D, Benedetti F, Stasiak A (2018)
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids
, Bioinformatics, bty365, DOI: 10.1093/bioinformatics/bty365.
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling